Gene detail information of Glyur000016s00002998 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G31240.1 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004495108.1 | 0 | PREDICTED: nephrocystin-3-like [Cicer arietinum] |
| COG | NP_617168.1 | 6.00E-18 | kinesin light chain [Methanosarcina acetivorans C2A] |
| trEMBL | tr|A0A072VMA4|A0A072VMA4_MEDTR | 0 | Kinesin light chain, putative {ECO:0000313|EMBL:KEH42558.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00016 | 30071 | 33356 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000016s00002998.1 | PF13424.1 | TPR_12 | 195 | 268 | 1.50E-10 |
| Glyur000016s00002998.1 | PF13424.1 | TPR_12 | 482 | 554 | 1.00E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.459 |
| SRR1783600 | control | 22.559 |
| SRR1783602 | moderate drought stress | 36.186 |
| SRR1811619 | moderate drought stress | 35.809 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.556 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.974 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.700 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.413 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.805 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.857 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.257 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.196 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.705 |
| SRR2868004 | Drought Stress (root) | 8.499 |
| SRR2967015 | Control (root) | 8.729 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.681 |
| SRR9715740 | Leaf | 7.602 |
| SRR9715741 | Leaf | 5.376 |
| SRR9715739 | Root | 18.765 |
| SRR9715742 | Root | 19.848 |
| SRR9715743 | Root | 20.738 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.712 |
| SRR8749028 | MeJA induced 9h | 9.519 |
| SRR8749029 | MeJA induced 9h | 14.561 |
| SRR8749030 | Uninduced | 1.310 |
| SRR8749031 | Uninduced | 1.861 |
| SRR8749032 | Uninduced | 3.407 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.838 |
| SRR8400027 | Control - Root | 11.175 |