Gene detail information of Glyur000015s00000875.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G54480.1 | 4.00E-91 | SKP1/ASK-interacting protein 5 |
| NR | KHN21305.1 | 1.02E-163 | F-box protein SKIP5 [Glycine soja] |
| Swissprot | tr|Q94FT2|SKIP5_ARATH | 6.00E-127 | F-box protein SKIP5 |
| trEMBL | tr|I1LLD0|I1LLD0_SOYBN | 5.00E-157 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G21550.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00015 | 641206 | 644314 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000015s00000875.1 | PF12937.2 | F-box-like | 41 | 78 | 1.50E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 35.566 |
| SRR1783600 | control | 35.436 |
| SRR1783602 | moderate drought stress | 41.265 |
| SRR1811619 | moderate drought stress | 40.918 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.234 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 32.993 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.009 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.582 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 27.909 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 28.456 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.504 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.765 |
| SRR2868004 | Drought Stress (root) | 43.258 |
| SRR2967015 | Control (root) | 49.593 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 26.310 |
| SRR9715740 | Leaf | 30.505 |
| SRR9715741 | Leaf | 34.128 |
| SRR9715739 | Root | 19.226 |
| SRR9715742 | Root | 22.356 |
| SRR9715743 | Root | 18.469 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.178 |
| SRR8749028 | MeJA induced 9h | 26.525 |
| SRR8749029 | MeJA induced 9h | 17.084 |
| SRR8749030 | Uninduced | 20.774 |
| SRR8749031 | Uninduced | 14.337 |
| SRR8749032 | Uninduced | 20.663 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 54.189 |
| SRR8400027 | Control - Root | 49.475 |