Gene detail

Gene detail information of Glyur000015s00000868

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07940.1	2.00E-147	Calcium-dependent ARF-type GTPase activating protein family
NR	XP_004514475.1	0	PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11-like isoform X3 [Cicer arietinum]
Swissprot	tr\|Q8L7A4\|AGD11_ARATH	0	Probable ADP-ribosylation factor GTPase-activating protein AGD11
trEMBL	tr\|G7IYV8\|G7IYV8_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK45534.1}

Sequence

Transcript Sequence

>Glyur000015s00000868.1
AATTGATGAAATCAATCTGTGTTTCTTAAATACTTGTCAGATTGTCATGTACAAGATTTCTTAACACGCTCCCATGTAAGCGCGTTCAAATATTTCTTCTCTCTGAACATCAATGTTCCTTGAGAATAAGCTGCATGCCATAGACTCATGCCCAATTTTAAGTGGAGAAAAGATACCATCTGATCTGCTGGAGATGTCTATCCAGCAAGGGAATTCTGATATCAACAGTGTATCAGGGTCAGGATCTTGCCTTTATGATCTCTTCTGCACTGAAACACCAAGTTTGAATTCTCAAAGTCAAAGGGAACGATGGATGTTTTCTGGTCCACAGGAAAGGTTAGACAATCTGATGCGTCAAGCTGGGAACAAGTTCTGCGCTGATTGTGGATCCTCAGAGCCAAAATGGGTGTCTTCAAGTTTTGGAGTATTTATTTGCATCAAGTGCTCTGGTATACACAGAAGCCTNGGAGTCCATATATCAAAGGTTCTATCACTGAACCTAGATGAATGGACAGATGAACAAGTGGATGCTTTGGTGAAGTTGGGCGGAAATACNGTAATCAATAAGAAGTATGAAGCTTGCCTGCCAAGTTACATAAAAAAACCAAAACCACATTCTTCCATTGAGGATCGCTCTGATTTTATTAGGAGAAAATATGAGCTGCTACAGTTTTTGGATTCTGAGGAGAATTTATCTTGCCCCTTTGTACCACCTTCTCATCGAAGAAGTTCATCAGCCTCTCCGAGCAGTTCCTCAAGCAACAATTCTTCTCCACCAGAAAAAAAACGATACGATAAAATATCAACTAAAAACCGTGTTGGGCTATCATTTCGAAATAGCTGGGGAAGCAAAAATGAGTATAAGAGTACAAAGAAGAGCACCTCATTGGCAGGTATGGTTGAATTTGTTGGATTGATCAAGGTTAATGTTGTTAAAGGCACTAACCTGGCTGTCCGGGACGTGGTGACTAGTGACCCTTATGTCATCCTTTCTCTGGGTCACCAATCAGTGAAGACTCGTGTCATAAAGAACAATTTAAATCCAGTTTGGAATGAAAGCCTAATGCTGTCGATCCCCGAGAGCATTCCTTCTCTTAAAGTGCTTGTGTACGACAAGGATACTTTCTCCACTGATGATTTTATGGGTGAGGCTGAAATAGACATTCAACCTCTAGTTTCAGCAGCAAAGGCATATGAGAAATCTTCAATCAATGAGTCCATGCAGCTTGGGAAATGGGTAGCAAGTGGTGACAACACTCTTGTCAAAGATGGAATCATCACCCTTGAAGAAGGGAAGGTCAGACAAGAAATCTCACTGAGGCTACAGAATGTTGAGAGAGGTGTGCTGGAAATTGAGCTTGAATGTGTTCCTCTTACTCAGTAGCTGAGAATAGGAGTTGAGAGGAGGGTCATAACCAACTTTAGCAGCACACATTCATTATTGTATAGATTGTCCTGTCTCAGTTTCCATTTTGTACATTGTTCTGTGAGACTGTGACCATCCTTGTGTAGATGAACAAATGTGAGTTATCAGTGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00015	613778	619420	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005096 GTPase activator activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000015s00000868.1	PF01412.13	ArfGap	74	189	4.20E-37
Glyur000015s00000868.1	PF00168.25	C2	270	347	5.10E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.726
SRR1783600	control	2.711
SRR1783602	moderate drought stress	4.333
SRR1811619	moderate drought stress	4.427

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.281
DRR006520	Root Summer glycyrrhizin high producing strain	9.214
DRR006521	Root Winter glycyrrhizin high producing strain	9.261
DRR006522	Root Winter glycyrrhizin high producing strain	9.144
DRR006523	Root Summer glycyrrhizin low producing strain	8.817
DRR006524	Root Summer glycyrrhizin low producing strain	8.665
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.542
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.408

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.864
SRR2868004	Drought Stress (root)	16.891
SRR2967015	Control (root)	13.226

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.238
SRR9715740	Leaf	9.903
SRR9715741	Leaf	16.286
SRR9715739	Root	2.033
SRR9715742	Root	8.675
SRR9715743	Root	6.690

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.820
SRR8749028	MeJA induced 9h	5.483
SRR8749029	MeJA induced 9h	2.916
SRR8749030	Uninduced	24.145
SRR8749031	Uninduced	21.894
SRR8749032	Uninduced	12.887

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.837
SRR8400027	Control - Root	14.193