Gene detail information of Glyur000015s00000864 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G59560.2 | 9.00E-82 | sensitivity to red light reduced protein (SRR1) |
| NR | XP_004514476.1 | 1.69E-176 | PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cicer arietinum] |
| Swissprot | tr|Q8GWZ6|SRR1_ARATH | 5.00E-101 | Protein SENSITIVITY TO RED LIGHT REDUCED 1 |
| trEMBL | tr|I1LLC4|I1LLC4_SOYBN | 3.00E-166 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G21500.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00015 | 606251 | 607084 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000015s00000864.1 | PF07985.7 | SRR1 | 104 | 158 | 5.50E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.586 |
| SRR1783600 | control | 7.585 |
| SRR1783602 | moderate drought stress | 4.119 |
| SRR1811619 | moderate drought stress | 4.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.623 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.746 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.025 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.936 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.806 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.529 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.053 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.167 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.584 |
| SRR2868004 | Drought Stress (root) | 15.239 |
| SRR2967015 | Control (root) | 12.076 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.429 |
| SRR9715740 | Leaf | 4.997 |
| SRR9715741 | Leaf | 4.404 |
| SRR9715739 | Root | 3.572 |
| SRR9715742 | Root | 5.771 |
| SRR9715743 | Root | 6.983 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 30.466 |
| SRR8749028 | MeJA induced 9h | 18.762 |
| SRR8749029 | MeJA induced 9h | 18.515 |
| SRR8749030 | Uninduced | 10.007 |
| SRR8749031 | Uninduced | 8.935 |
| SRR8749032 | Uninduced | 7.742 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.369 |
| SRR8400027 | Control - Root | 10.029 |