Gene detail

Gene detail information of Glyur000015s00000860.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G54460.1	0	SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein
NR	KHN21309.1	0	F-box protein [Glycine soja]
COG	YP_007323167.1	4.00E-15	SNF2-related protein [Fibrella aestuarina BUZ 2]
Swissprot	tr\|Q9M1I1\|FB304_ARATH	0	F-box protein At3g54460
trEMBL	tr\|I1LLD5\|I1LLD5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G21600.1}

Sequence

Transcript Sequence

>Glyur000015s00000860.1
TAATAATAAAACGACACGTTGATATGGATCCAATTAACCACGTGGTGCCGCACACAAGCAGCACAAAGGTTAAGGTATGTGGCCAAGCAAACAGCGTCGCACAAAGGTTAAGGTATGTGGCCAAGCAAACAGCGTCGCACGCACAATGTAACAATATAAAACGCCAACTACAAGGACGTCGTTTCGTTATTTTATTCAATATTGATTTCTTTCCCATTATTTTCCCTTCGTAAACNGTCAACTTTAATCTGTTGGCTTTCGCGTAAAGTGGGACTTTCCCTGCTCCTCCTATTCTGCCACTCTTTTTTTTATTTTTCTTATTTTCGGTTCTTTGGTTTGGTCATCTTCTGAGACGTGCAATTCCCGAATCACCCTCTTATCTCATTCCTCAGTTCCGTTCGGTTCCGTCCGGTTCCGTCCGGTTCCTTCCACCAATGTCCGCCGACGATTCCCTCGCGGACCACAAGCTCTGCGGTTTCCTCTGTGCGGTTCTCACACTCACTCCTTCGCAGCGCCACGACGACGGCAACAACGACCACCCGCGCTTCAGCGAACGATGCGAGATCTTCAGCGATGGCGCGAGGGTCGGGTTCCGGACACAAAACGGCGTCGTTTTGGGGCCAGTCGTTTCGGCGGAATGCGAGAGCTCAAGGGCGAAGAGGACGAGGAAGGTTGGGACGGTGAATGGGAGCATAAGCGTGGTTCATCAGCTTCATGCCCTGGTCACGCGCAAGTGCCTGAAGATCGATGCTCGCGTGGTGTGCGTCGAGGTGCCTAGGGTTGTGGTGCTCGTCGACGTTTACCTTCCCATTCAGTTGTGGAGTGGGTGGCAGTTCCCGAGATCGGGTTCCGTCGCCGGCGCCGTTTTTCGCCACTTGAGTTGTGATTGGGATGAGAGAAGTTCAATGCTTTCTTATCCAGACCACAATAGGAAGACTCATGGAAAAGATGAGAGCATTTGGAACCTTTCTGATTGTCATGTGCTTGGTTGCAAGCTCCATTCCCGTGTGAGCGATTCTTCAAGGGAAAGGCTATTTGAACTTCATGAAATATTTAAGACAGTACCGGGTGTAGGAAAACAGCATAAGTTTATTAGTTCCAAGATAATACCTATGGACAACACTTGCAGATCTGGGATCTGGGAGATATCTGACGATATTTTAACTAAAATTCTAGCTTCCTTGGACCCAATGGACCTCACTAGGGTTTCTGCAACATGTCATCATCTAAGATCCTTGGCTGCTTCTGTAATGCCTTGTACAAAGTTAAATCTTTTTCCTCATCAGCAGGCAGCAGTTGAGTGGATGTTGCATCGTGAGCGAAATGCTGAACTTTTGCCACATCCTTTATATGTAGCTCTCTCAACTGACGATGGCTTTAGCTTCCATGTAAATACTGTATCTGGTGAAATAGTCACCGGGGAAGCTCCCACCATCAAAGATTTTCGTGGAGGAATGTTTTGTGATGAGCCTGGCTTGGGTAAAACTGTAACAGCTCTTTCTCTTATNGTGAAGACGCAAGGTACATTGGCAGACCCACCAAGTGGGGCACAAGGAGTTTGGTGTCAACATAATGGTAACCAGAAATGTGGCTATTATGAGANCAGTAGTAATAACATCACTGGTTGTACTATCTCAGGTAAGAGGGATGTTTGCCAAGATACAAGTAGAGATGATGACNATCATGAACACTCCTCCAAAAGATCCAAATTGATGGATCCTGGTCAGAAAATCACAAAACCTCAAGATTCATGTTCTGTACAAGAAAACAAATCACCTGTTGATGCTTGCTTTGAGGAATCTATGCCTGCTAGTCGGTGCACTAGGAGGTTGAGTCGCATAAAGAAAAATCTATATTTCACAGATGAAGAGGAGGCTATGATTTCCAAAGAAAGAAAAATCGGTGAAAGACCGATTAAAACAAAGCATGCATCAGATGTTGCATCTTGTGTATCTCAAAACAAGCTAGTTGATACTTCATACAGATGTGAACAGAGTTACAAGTGGCCTGGGAAGCATAAAGTCGACTGTTTGGAATATAGTGATACGTGGATTCAGTGTGATGCTTGTCACAAGTGGCGAAAGCTTGCAGACANTAGTATGGCTAATGATAGTGCAGCATGGTTTTGTAGTATGAACACTGACCCTTTATATCAGAGTTGTAGTGTCCCGGAACAATATTTTCAGAATAGCTGTAAGATAACTTACTTACCAGGATTTCACTTGAAAGGAACTCCCGGGGGTGAGAAACAAAATGTTTCATTTTTCACTAGTGTGCTTAAGGAGCACTATTCACTGATAAATTCTCAGACAAAGAAGGCCCTGACTTGGTTGGCTAAAATTTCAATGGACAAGCTTGCAGTAATGGAAACAAATGGCATACGGGGTCCTATTTTAAACAACTGCACTGTGTCTAATGGAAATTTTAATCCATTCCACAGAATATTTCAAGCATTTGGCCTCGTAAAGAGAGTAGAGAAAGGTGTATGCAGGTGGTACTACCCACAAAATCTTAACAATTTGATTTTTGATGTGGCTGCCCTTGGAATGGCTCTCCGTGAGCCATTAGATTTTGTTAGGTTATACTTGTCAAGAGCGACCCTGGTAGTTGTTCCAGCAAACTTGGTTGATCATTGGAAAACACAAATAGAAAAGCATGTCAGGCCTGGTCAATTACGGGTTTACATTTGGACTGATCATCGGAAGCCATCTGTACACTCTCTTGCTTGGGATTATGATGTTGTCATCACTACATTTAATCGTCTGAGTGCAGAGTGGGGCCCACGTAAGAGGAGTGCTCTGATGCAAGTGCATTGGTTTAGGATAATTTTAGATGAAGGGCATACTCTTGGCTCAAGCTTGAACTTAACAAACAAGTTGCAAATGGCTATTTCATTGGTGGCTTCAAATCGATGGATACTAACAGGAACTCCAACACCTAACACTCCTAACAGCCAACTCCCACATCTACAACCATTGCTAAGGTTCCTTCATGAAGAAGTTTATGGACTGAATCAAAAGTCATGGGAAGCTGGTGTACTTAGGCCATTTGAGGCAGAGATGGAGGAAGGTCGGTCTCGTCTGTTGGATTTACTTCACAAATGCTTGATTAGTGCAAGAAAGATAGATTTGCAAAGTATTCCACCATGCATTAAGAAAGTTGTTTTACTAGATTTTAATGAGGAGCATGCTAGAAGTTACAATGAATTGGTGCTCACAGTTCGGCGTAATATATTGATGGCTGACTGGAATGATCCTTCACATGTTGAGAGTCTACTGAATCCAAAACAGTGGAAGTTTCGTAGTGCAACTATAAAAAATGTTAGACTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATCCAAGAAACAATGGATATGTTAGTAGAAAGTGGTCTAGATCNTACGTCGGGAGAGTATACGTCCATAAGATATAGTCTCCTATATGGTGGTCACTGTGTCAGGTGCAAAGAATGGTGCCGCCTTCCTCTCATTACACCATGTCGGCATCTGTTGTGCCTTGATTGTGTTTCGATAGACAAGACAAAGTGTACATATCCTGGATGTGGTAACTTATATGAGATGCAGAGTCCTGATGCAATGGCACGGCCAGAAAATCCTAACCCAAAGTGGGCTGATAATTGGGATCCTGATTGGCAATCAACATCTAGTAGTAAAGTCGCATACCTCGTCAAGAGGTTGAAAGCTTTGCAAGGAACAAATGAAGAGATGGGTTTATATACAGACAATAGCAATGACGATATGCATACTGAGAATAGTTTCCCTTTGCACACGAGAGATGCCAAATCATCATTCCAGGAAGGTTCTATAAGTAGCACTAAGACCAATTTGGTCCCTGAAAAAGTTTTGATATTTTCTCAGTTTCTTGAGCATATACATGTCATTGAACAGCAGTTGGCTGTTAATGNTATCAAATATACTGGAATGTATAGCCCAATGCATTCTAGCAACAAGAAAAAGTCATTAGCCATGTTCCAGCATGATTCAAGTTGTATGGCACTTCTGATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTTACGCATGTATTTTTAATGGAGCCTATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGCCGTGCCCATCGCATGGGTGCTTCTCGNCCTATTCATGTGGAAACATTAGCAATGCGTGGTACAATTGAAGAACAAATGCTAAGATTTTTACAGGATGCTGATAAATGTAGAAGATTTCCAAGTAAAAATGTTGCCAAATCAGAAGATGACAGTGGGGGACGAGGATATCGATCATTGCATGATTTTGCTGAAAGTAGTTATCTACTGGAACTTAGATTTGTATAAACTATTCCAGAAGCTCTAGAAGGCGTTTGATTGATCAACTTCAAGTACAGACTATTTTGCTTTAGGCAAGTCCTATGGACATCCTGCAATCAGATTGCATACTCCTGAATATGATTTTTGTCTTGGATATTTAATCTTACTACTGCTCATATATGATGAGATGNTATGATAAGCATTGGAGGGTGAAAGGTCTTATTTTGTATAGCATTATGCTGCTATTTTGCAGCATCTCTTCTGTTTGCCAATGCTTAATGAAATAGTGCATGGCTCCCTGCATATGCTTTTTGTAAAGAATATAGTCTAGTTGATTTGAGGTGCAGTTTGGAGTCAAGAAA

Protein Sequence

>Glyur000015s00000860.1
MSADDSLADHKLCGFLCAVLTLTPSQRHDDGNNDHPRFSERCEIFSDGARVGFRTQNGVVLGPVVSAECESSRAKRTRKVGTVNGSISVVHQLHALVTRKCLKIDARVVCVEVPRVVVLVDVYLPIQLWSGWQFPRSGSVAGAVFRHLSCDWDERSSMLSYPDHNRKTHGKDESIWNLSDCHVLGCKLHSRVSDSSRERLFELHEIFKTVPGVGKQHKFISSKIIPMDNTCRSGIWEISDDILTKILASLDPMDLTRVSATCHHLRSLAASVMPCTKLNLFPHQQAAVEWMLHRERNAELLPHPLYVALSTDDGFSFHVNTVSGEIVTGEAPTIKDFRGGMFCDEPGLGKTVTALSLXVKTQGTLADPPSGAQGVWCQHNGNQKCGYYEXSSNNITGCTISGKRDVCQDTSRDDDXHEHSSKRSKLMDPGQKITKPQDSCSVQENKSPVDACFEESMPASRCTRRLSRIKKNLYFTDEEEAMISKERKIGERPIKTKHASDVASCVSQNKLVDTSYRCEQSYKWPGKHKVDCLEYSDTWIQCDACHKWRKLADXSMANDSAAWFCSMNTDPLYQSCSVPEQYFQNSCKITYLPGFHLKGTPGGEKQNVSFFTSVLKEHYSLINSQTKKALTWLAKISMDKLAVMETNGIRGPILNNCTVSNGNFNPFHRIFQAFGLVKRVEKGVCRWYYPQNLNNLIFDVAALGMALREPLDFVRLYLSRATLVVVPANLVDHWKTQIEKHVRPGQLRVYIWTDHRKPSVHSLAWDYDVVITTFNRLSAEWGPRKRSALMQVHWFRIILDEGHTLGSSLNLTNKLQMAISLVASNRWILTGTPTPNTPNSQLPHLQPLLRFLHEEVYGLNQKSWEAGVLRPFEAEMEEGRSRLLDLLHKCLISARKIDLQSIPPCIKKVVLLDFNEEHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRSATIKNVRLSCCVAGHIKVTHAGEDIQETMDMLVESGLDXTSGEYTSIRYSLLYGGHCVRCKEWCRLPLITPCRHLLCLDCVSIDKTKCTYPGCGNLYEMQSPDAMARPENPNPKWADNWDPDWQSTSSSKVAYLVKRLKALQGTNEEMGLYTDNSNDDMHTENSFPLHTRDAKSSFQEGSISSTKTNLVPEKVLIFSQFLEHIHVIEQQLAVNXIKYTGMYSPMHSSNKKKSLAMFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMLRFLQDADKCRRFPSKNVAKSEDDSGGRGYRSLHDFAESSYLLELRFV

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00015	589345	596959	-

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000015s00000860.1	PF00646.28	F-box	237	274	0.00014
Glyur000015s00000860.1	PF00176.18	SNF2_N	283	933	2.40E-80
Glyur000015s00000860.1	PF07496.10	zf-CW	538	581	3.30E-15
Glyur000015s00000860.1	PF00271.26	Helicase_C	1168	1243	1.10E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.100
SRR1783600	control	5.039
SRR1783602	moderate drought stress	5.341
SRR1811619	moderate drought stress	5.333

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.812
DRR006520	Root Summer glycyrrhizin high producing strain	5.718
DRR006521	Root Winter glycyrrhizin high producing strain	9.252
DRR006522	Root Winter glycyrrhizin high producing strain	9.092
DRR006523	Root Summer glycyrrhizin low producing strain	7.269
DRR006524	Root Summer glycyrrhizin low producing strain	7.193
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.661
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.587

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.475
SRR2868004	Drought Stress (root)	12.253
SRR2967015	Control (root)	11.499

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.823
SRR9715740	Leaf	7.856
SRR9715741	Leaf	8.833
SRR9715739	Root	1.553
SRR9715742	Root	6.010
SRR9715743	Root	5.683

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.739
SRR8749028	MeJA induced 9h	49.019
SRR8749029	MeJA induced 9h	26.769
SRR8749030	Uninduced	14.147
SRR8749031	Uninduced	31.890
SRR8749032	Uninduced	24.136

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.230
SRR8400027	Control - Root	12.074