Gene detail information of Glyur000015s00000856.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G57040.1 | 2.00E-56 | response regulator 9 |
| NR | XP_007148939.1 | 4.11E-103 | hypothetical protein PHAVU_005G027100g [Phaseolus vulgaris] |
| COG | YP_006721667.1 | 3.00E-13 | response receiver histidine kinase [Geobacter metallireducens GS-15] |
| Swissprot | tr|O80366|ARR9_ARATH | 1.00E-69 | Two-component response regulator ARR9 |
| trEMBL | tr|V7BV84|V7BV84_PHAVU | 2.00E-103 | Uncharacterized protein {ECO:0000313|EMBL:ESW20933.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00015 | 576015 | 577717 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Orphans |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000015s00000856.1 | PF00072.19 | Response_reg | 11 | 138 | 7.60E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.272 |
| SRR1783600 | control | 9.092 |
| SRR1783602 | moderate drought stress | 7.963 |
| SRR1811619 | moderate drought stress | 7.821 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.238 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.346 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.035 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.513 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.725 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.002 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.732 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.629 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 29.314 |
| SRR2868004 | Drought Stress (root) | 27.753 |
| SRR2967015 | Control (root) | 26.962 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.314 |
| SRR9715740 | Leaf | 1.949 |
| SRR9715741 | Leaf | 7.558 |
| SRR9715739 | Root | 2.400 |
| SRR9715742 | Root | 4.766 |
| SRR9715743 | Root | 5.231 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.580 |
| SRR8749028 | MeJA induced 9h | 1.726 |
| SRR8749029 | MeJA induced 9h | 1.007 |
| SRR8749030 | Uninduced | 11.135 |
| SRR8749031 | Uninduced | 11.368 |
| SRR8749032 | Uninduced | 4.583 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.997 |
| SRR8400027 | Control - Root | 11.649 |