Gene detail information of Glyur000015s00000852 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G55850.1 | 0 | Amidohydrolase family |
| NR | XP_004514887.1 | 0 | PREDICTED: putative amidohydrolase YtcJ-like isoform X1 [Cicer arietinum] |
| COG | YP_002762316.1 | 6.00E-117 | hypothetical protein GAU_2804 [Gemmatimonas aurantiaca T-27] |
| trEMBL | tr|A0A072UTQ8|A0A072UTQ8_MEDTR | 0 | Amidohydrolase YtcJ-like protein, putative {ECO:0000313|EMBL:KEH33012.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00015 | 554522 | 559494 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000015s00000852.1 | PF07969.6 | Amidohydro_3 | 105 | 527 | 7.40E-56 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.158 |
| SRR1783600 | control | 14.278 |
| SRR1783602 | moderate drought stress | 9.831 |
| SRR1811619 | moderate drought stress | 9.782 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.576 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.617 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.601 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.410 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.026 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.850 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.674 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.687 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 22.483 |
| SRR2868004 | Drought Stress (root) | 17.968 |
| SRR2967015 | Control (root) | 15.329 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.475 |
| SRR9715740 | Leaf | 27.757 |
| SRR9715741 | Leaf | 15.275 |
| SRR9715739 | Root | 8.373 |
| SRR9715742 | Root | 10.959 |
| SRR9715743 | Root | 11.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.951 |
| SRR8749028 | MeJA induced 9h | 5.918 |
| SRR8749029 | MeJA induced 9h | 2.431 |
| SRR8749030 | Uninduced | 1.962 |
| SRR8749031 | Uninduced | 0.169 |
| SRR8749032 | Uninduced | 0.698 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 37.889 |
| SRR8400027 | Control - Root | 38.660 |