Gene detail

Gene detail information of Glyur000015s00000850

Functional Annotation

Database	Orthologs	E value	Annotation
NR	XP_003598518.1	0	hypothetical protein MTR_3g014680 [Medicago truncatula]
trEMBL	tr\|G7J0K8\|G7J0K8_MEDTR	0	Transglutaminase family protein {ECO:0000313\|EMBL:AES68769.1}

Sequence

Transcript Sequence

>Glyur000015s00000850.1
CTAATGGGTTTTGGGCATTAATATCTTTTTTGAAATNGTAATTATCAGTGACGATCATTTTGTTGTTTTCTGAATTTTAGCAATGTTTCTCTGTTATTACTTATTCTGTGAAGTGGGTGGCTGTGTCAGTCAGAGTCTGTTACTCAACTAACTATGTCTTCTGTGACTGTGTCACCTTCTCTTCCCAGAACCTCTTTCCTAACACTTCCCTCCACATTCTCCAAATTCCATTTATGCCCTCTTCCATTCCCTTCTTCTTCTTCATGCTCTCGCGTGGTGTGTCGTGGCGGCTCCAAAGTGCAACACGTGGCCGGTGACCTCAACTTCGTCTTGCACGATGCTCTCGATGCTTCTGGAATCGACACCACCCATGCCAGAGAAGCCAGGGAGGAGTTCTGCTCACAGATTCAAAGATTTACTGATATTGAGAAGGAAACCAGCATTTGCATCAACAGGCATGTTGATTTGGGGAAAACTGCTCTCTATATAGCTGCAGAGGATGATTCTCTGGTATCNCATTCATCAGTTCCACTTCCTGTGGATGCTTTCATTTCAAGATTAGATGATCTATCAATGGACTACTGTCCTAACTACAGCCCCCAATATGATTCATCCCCCGAGAAGTTTCTAGAGAGCATAGAGAGATTTCTGTATGCCCACAAGGCATGGTTTCAGGAGAACCAGTTCAAATCTATTGGAACCACAAGCACTTTATCTTCACTCGGCTATCATAAGCATAAAAGCAAGGAATCAGACCAAGCACACATAATGACATCAGGGAACCTAATGGTTGAGATCTTAAACAATCTGAAGCAAGCATTCTGGCCTTTTCAACATGATCACACCAAAAGCTTATTCTTAAGGGCAGCACACGCTGCTAACTGTGTTGACAGATCTGATTTTGTTGGAGAAAGTTGCTCTCAAATTGCATCAGCTAAGGCTGCTCAACATAGACTGGACCGAGGTGTTTGGACCAGTGTGCGCTTTGGGGACATGAGGCGTTCATTGTCCGCATGTGAACGCCTTATCCTCCTTACAAATGATGCAAATGAGTTAAGAGATTACAGCATCCTTCTCTATCATTGTGGATTATATGAGCAGTCGCTGCAATACCTGAATAAGTACCAGGAACTCAAGAACTCATCTTCACAAGTAACAACATCATCAAACTCTCTAAGTAGNCCGGAAGAAGATGCTGCGGATAAACTGATGATGCGCTTGAATCTCATCCTGATGGAGCAAGGGTGGAGTCGGCCATCTTATGCCAGAAACTTTCTCAGTAACAACTCTGATCCATGGTAGTTCCTCTTTCGTACAACATCAAGGAAGATTTNATGTCAGCTCACAATGGAGCAAGTTTTGCTGTATTTTCTGGACACAGCATGGGAAACTGGGATATANGCAGCTGAAGTTTCTCCAGTAGCTTGCAAGCTCTGCAATCATNCAATTAAAAACGTGGTTGCAACTGCTGAAGTGGACGAGATTNTCCGATAAATAGAAAGACATTACATACACATAGATTGATGGAAAGTAACAACCATCTATTTTATTTATGCAGGGAGTAAAGAAAATTCTCTATCTCTATTNCCTGTGTTTTTGTAATTAAATAATTCTGCACTTTTTTTACTTGTATTTCTTCTGTAATGTTCATGTAAATTCTAAACCTGTTTTTATCTAACAACG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00015	547759	552169	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000015s00000850.1	PF13371.1	TPR_9	279	356	3.80E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.807
SRR1783600	control	22.390
SRR1783602	moderate drought stress	27.050
SRR1811619	moderate drought stress	26.399

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.998
DRR006520	Root Summer glycyrrhizin high producing strain	15.603
DRR006521	Root Winter glycyrrhizin high producing strain	27.306
DRR006522	Root Winter glycyrrhizin high producing strain	26.074
DRR006523	Root Summer glycyrrhizin low producing strain	19.269
DRR006524	Root Summer glycyrrhizin low producing strain	19.329
DRR006525	Leaf Summer glycyrrhizin high producing strain	79.829
DRR006526	Leaf Summer glycyrrhizin high producing strain	79.293

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.351
SRR2868004	Drought Stress (root)	11.831
SRR2967015	Control (root)	11.763

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.444
SRR9715740	Leaf	54.865
SRR9715741	Leaf	23.460
SRR9715739	Root	7.149
SRR9715742	Root	16.135
SRR9715743	Root	13.064

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.748
SRR8749028	MeJA induced 9h	9.492
SRR8749029	MeJA induced 9h	3.015
SRR8749030	Uninduced	5.840
SRR8749031	Uninduced	1.053
SRR8749032	Uninduced	1.105

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.119
SRR8400027	Control - Root	25.863