Gene detail

Gene detail information of Glyur000015s00000849.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G12330.4	2.00E-42	Lateral root primordium (LRP) protein-related
NR	XP_003539250.1	4.04E-168	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Glycine max]
Swissprot	tr\|Q94CK9\|LRP1_ARATH	9.00E-59	Protein LATERAL ROOT PRIMORDIUM 1
trEMBL	tr\|K7LQM7\|K7LQM7_SOYBN	2.00E-168	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G21700.4}

Sequence

Transcript Sequence

>Glyur000015s00000849.1
GTGAAAACCAAACATACTCATTCTTTTCTGATCAAATTCAAATCATAGATCACATATATGCATCAAAAGAATAGAAGCTCTCAGGTTCTGTTCTCATTCTCTCTATATAACATCTCCAATCTCCATATTCAACATCATCATCTCAATGAGATATAAAGGGTGTGACTAAATAACTAAACACACACACACACACACCAAAACCAAAAACAACCTCAATCTCAGAGCTTTGTGTTAACTTGTTCCAATGAGCATGTTAGGCCTTAGAGACCTAGTTCTCATAGCTCCAACCCCTTCCCTTCACCATCATCATCATCATCAACAACACCAACACCAACAGGGCCAATCCATTTCAACNGACCACAACAATTCCAACAACCTCCCTTTGCCTTCTTCAGCTGCTCTCAGTGTTGGCTTTGGCATCTTCCCTCTCCTCACTGCCACTCCATGCATGCCACAACACCCTCACAACAATGAGCTTCAAAATCAAGACTGTGGTGGCAACAACAACAACAGCAACAACTATTGGAACCTTAGGATGTGCCCAGAAGAAGTGAATCCTCCAAAGAAAGGAGTGATCAACGTGGATGATGATGATGATGAGAACAACCACAACAACAACAACAACAACAACAAGGTGATGGTGATGATGGAGAGTGAGGAAAATGGGGTGTATGGTGCTGAGTTCAGGGTGTGTCAGGATTGTGGGAACAGGGCAAAGAAAGATTGCCTCTTTAGGAGGTGCAGGACTTGTTGCAAGGGACGTGGGTATGACTGCACCACTCACGTGAAGAGCACGTGGGTTCCCTCTACTCGCCGCCGGGAACGTGAGATGGCGGTGGCTGCCGCCGTTGGTGGTGGTGGTGGTGATGGTTGTTCTTCTGGGGCTAAGAGGCCAAGACCTTTAGTGGGGTCCTCACTGAATGCCACTGCCACCTCTCATAGTTCAAACTCTAATGCTACCACACCTAAGAGCTTTGCTACTACNTCTTCTCACCAAGATGCTGGATTCAAAGAGACTTTACCAGGTCATGTTCGTGCACCTGCTGTGTTCAGGTGCCATAGAGTGACTGCTATTGGCAATGGTGAAGATGAATTTGCCTACTTGGCCACGGTGCATATTAGTGGCCATGTGTTCAAGGGGTTTCTCTATGATCATGGTGTTGATGCCGGGAAAAATGCAATGATGAATATGCCTTGTGTTTCAGAACTGCAACTGGGAAACAATTGCAGTGGGAAGAATGTGGAATGTTCTTCTGCAATTGGGGTTCCAACCAATAATAATGCCTACCCTGCTTCTGCTAGCTGAAGATTGCTTAACAGGTGATGGATCAGTTTCATGANCCACCAAATTATGGAAGGCAAGGCNGTTCATTCTGCAGTTTTGCTGAGAAAACTGACCATATATATGCTAAGTGGTCTTCAATTGTGTAAATTTATCCTCTAAAAAATGTTAATATGCATATGTAAAGCTGAGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00015	539694	543992	-

Gene family

Gene family	subfamily
Transcription Factors Family	SRS

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000015s00000849.1	PF05142.7	DUF702	149	307	1.30E-55

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	42.288
SRR1783600	control	42.142
SRR1783602	moderate drought stress	39.219
SRR1811619	moderate drought stress	38.003

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.854
DRR006520	Root Summer glycyrrhizin high producing strain	19.969
DRR006521	Root Winter glycyrrhizin high producing strain	0.224
DRR006522	Root Winter glycyrrhizin high producing strain	0.220
DRR006523	Root Summer glycyrrhizin low producing strain	23.352
DRR006524	Root Summer glycyrrhizin low producing strain	22.916
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.255
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.375

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.381
SRR2868004	Drought Stress (root)	11.026
SRR2967015	Control (root)	9.538

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.151
SRR9715740	Leaf	1.175
SRR9715741	Leaf	0.900
SRR9715739	Root	20.954
SRR9715742	Root	14.614
SRR9715743	Root	17.099

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.913
SRR8749028	MeJA induced 9h	15.154
SRR8749029	MeJA induced 9h	2.854
SRR8749030	Uninduced	3.268
SRR8749031	Uninduced	0.617
SRR8749032	Uninduced	1.579

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.911
SRR8400027	Control - Root	17.845