Gene detail

Gene detail information of Glyur000015s00000846

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G27890.1	6.00E-57	NADPH:quinone oxidoreductase
NR	KHG13392.1	1.33E-83	quinone oxidoreductase -like protein [Gossypium arboreum]
COG	YP_004267434.1	3.00E-27	NAD(P)H dehydrogenase (quinone) [Syntrophobotulus glycolicus DSM 8271]
Swissprot	tr\|Q9LK88\|NQR_ARATH	3.00E-77	NADPH:quinone oxidoreductase
trEMBL	tr\|M4E953\|M4E953_BRARP	5.00E-80	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Bra025309.1-P}

Sequence

Transcript Sequence

>Glyur000015s00000846.1
ATGAAATCAGAGGGGAGGACTATAACTCGTATATGTGGTCCCATTACATTAAGAAAATCAACTCAACTTTGTTTTGGTGCCTATCTCTCCGTGTTGTTGCGTGCCGTCATGTTTGTGCGCGGCAGAAACAAGAGAAGTAGAGATGAGAAGGAAGAAGAAGCGGTGACAGTTGTGGCAGAGAAACCGGTGATTAAAGTGGCGGCTATATGTGGCTCTTTGCGCAAAGCTTCCTACAACAGAGGCCTCATCCGTGCTGCACTAGAGCTGACGAAGGAGCAAATCGAGGGAGTCCACGTGGAGTACATCGAGATATCGGAGTTGCCGATGCTGAACACGGATCTTGAAGTGGAGGNCGCATTATATCCGCCTCAAGTGGAAGCGTTCCGTCAGAAGGTTCTGGAAGCCGATTCCTGTCTCTTCGCTTCTCCTGATTACAACTACTCCATCACTCGGAAACCTGCAGCGGCAGTGAGTGCTGTTGGCGGTGGGAGAAGAGCACAGCTTCATCTCCGTCAAATTGGAGTCTTTCTTGGTCTCCATTTCATCAACAAGCCAGAGTTGTACCTCAATGCACACCGGCCACCGGGAAAGTTCAACACCAACGCACCTTTGAAGAATGCATTGGACTGGGGATCAAGACCCCCAAATGTGTGGGATGGGAAACCTGCAGCGGCGGTGAGTGCTGTTGGCGGTGGGAGAAGAGCACAGCTTCATCTCCGTCAAATTGGAGTCTTTCTTGGTCTCCATTTCATCAACAAGCCAGAGTTGTACCTCAATGCACACCGGCCACCGGGAAAGTTCAACACCAACGGTGACTTGGTTGATTCAGAGACCAGAGAGAAGCTCAAAGAAATGCTTCTGTCCTTGCAAGCATTCACCTTGGGACTACAACTACAAAACTAGTGCTCAATTGTTTAATTTGGGTGGGTAATTTGATTCCTTTTCTTGGTCAACAAATGAAGAGGATGTGATGCAATGACAACATTGCTAATTGGTGTGTGTGGTTACCCCCTTTCTTTATATATTTCTTCATTGGTCACTTCTTGGTTCTCCTATATAGTAAGAATTTCTAAGATGTTACCTAAATGTTGTCAATGTAAATTTCACAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00015	528340	531165	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000015s00000846.1	PF03358.10	FMN_red	65	150	7.70E-16
Glyur000015s00000846.1	PF03358.10	FMN_red	201	260	3.90E-09
Glyur000015s00000846.2	PF03358.10	FMN_red	65	209	8.30E-33
Glyur000015s00000846.3	PF03358.10	FMN_red	7	65	8.60E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.906
SRR1783600	control	3.983
SRR1783602	moderate drought stress	3.647
SRR1811619	moderate drought stress	3.515

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.396
DRR006520	Root Summer glycyrrhizin high producing strain	2.366
DRR006521	Root Winter glycyrrhizin high producing strain	1.491
DRR006522	Root Winter glycyrrhizin high producing strain	1.481
DRR006523	Root Summer glycyrrhizin low producing strain	3.400
DRR006524	Root Summer glycyrrhizin low producing strain	4.581
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.019
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.038

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.917
SRR2868004	Drought Stress (root)	11.009
SRR2967015	Control (root)	9.629

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.354
SRR9715740	Leaf	19.233
SRR9715741	Leaf	29.758
SRR9715739	Root	7.890
SRR9715742	Root	5.186
SRR9715743	Root	6.236

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.594
SRR8749028	MeJA induced 9h	6.177
SRR8749029	MeJA induced 9h	6.727
SRR8749030	Uninduced	16.773
SRR8749031	Uninduced	10.465
SRR8749032	Uninduced	17.707

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.071
SRR8400027	Control - Root	10.172