Gene detail information of Glyur000015s00000844 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G42380.1 | 1.00E-21 | calmodulin like 37 |
| NR | KHN05761.1 | 3.40E-69 | Putative calcium-binding protein CML19 [Glycine soja] |
| COG | YP_289850.1 | 8.00E-08 | calcium-binding EF-hand [Thermobifida fusca YX] |
| Swissprot | tr|Q8RYJ8|CML19_ORYSJ | 2.00E-35 | Putative calcium-binding protein CML19 |
| trEMBL | tr|I1JW46|I1JW46_SOYBN | 2.00E-70 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G17650.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00015 | 523446 | 524022 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000015s00000844.1 | PF13833.1 | EF-hand_8 | 24 | 69 | 3.40E-06 |
| Glyur000015s00000844.1 | PF13833.1 | EF-hand_8 | 93 | 142 | 6.10E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.418 |
| SRR1783600 | control | 0.418 |
| SRR1783602 | moderate drought stress | 0.198 |
| SRR1811619 | moderate drought stress | 0.197 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 98.137 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 97.503 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.221 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.377 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 159.592 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 149.642 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.584 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.839 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.287 |
| SRR2868004 | Drought Stress (root) | 25.827 |
| SRR2967015 | Control (root) | 112.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 208.314 |
| SRR9715740 | Leaf | 194.897 |
| SRR9715741 | Leaf | 197.744 |
| SRR9715739 | Root | 238.412 |
| SRR9715742 | Root | 356.326 |
| SRR9715743 | Root | 343.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 678.539 |
| SRR8749028 | MeJA induced 9h | 828.853 |
| SRR8749029 | MeJA induced 9h | 905.421 |
| SRR8749030 | Uninduced | 1320.697 |
| SRR8749031 | Uninduced | 1253.263 |
| SRR8749032 | Uninduced | 644.508 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.792 |
| SRR8400027 | Control - Root | 51.394 |