Gene detail

Gene detail information of Glyur000015s00000842

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G07030.1	3.00E-153	Eukaryotic aspartyl protease family protein
NR	AGV54394.1	0	aspartic proteinase nepenthesin-1-like protein [Phaseolus vulgaris]
Swissprot	tr\|Q766C3\|NEP1_NEPGR	9.00E-39	Aspartic proteinase nepenthesin-1 (Precursor)
trEMBL	tr\|T2DNA5\|T2DNA5_PHAVU	0	Aspartic proteinase nepenthesin-1-like protein {ECO:0000313\|EMBL:AGV54394.1}

Sequence

Transcript Sequence

>Glyur000015s00000842.1
ATGAAATCCACACTTTCCCTCTTGTTCCTGTTGTTCTCCCTAGTCCAAGGGCTGAACAACCCCAAATGTGATGCCCAAGATCATGGCTCAACCCTGCAAGTGTTCCATGTGTTCAGCCCATGTTCCCCATTCAAGCCATCAAAGGCAGTTTCATGGGAAGAGAGTGTGNTCCAGCTACAAGCCAAGGACCAGTCAAGGCTGCAGTTCCTTGACAGCTTGGTGGCTAGGAGGTCAGTTGTTCCCATTGCCTCAGGAAGACAGATCATACAGAGCCCAACCTACATTGTTAGGGCCAAAATTGGTACCCCACCTCAGACATTGCTCTTGGCCATGGACACTAGCAATGATGCTGCTTGGATCCCTTGCACTGCTTGTGATGGCTGCACTTCAACCTTGTTTGCTCCTGAAAATTGTGGTTTGAGCGCGTGCAACTTCAACTTGACCTATGGTAGCTCCACCGTAGCGGCTAACTTGGTCNAAGACACGGTTACCTTAGCCACTGACCCACTTCCTGGCTACACCTTCGGCTGCGTTGCAAAGACCACTGGGACCTCTGCACCACCACAGGGTCTATTGGGCCTGGGCCGAGGCCCATTGTCACTATTGGCTCAGACNCAAAACCTCTATCAGTCCACATTCTCCTATTGCTTGCCCAGCTTCAAGTCCCTTAACTTCTCTGGGTCTCTAAGACTTGGGCCCGTTGCTCAGCCCAAGAGGATCAAGTTCACCCCTCTTCTCAAGAACCCTAGAAGATCATCACTCTACTATGTTAACTTGGTTGCTATTAGGGTTGGCCGGAGAGTCGTCGACATTCCTCCAGCGGCGTTGGCCTTCAATCCCACCACCGGAGCCGGCACCATCTTTGATTCCGGTACGGTGTTCACCCGGCTAGTTGAACCGGCCTACGTGGCGGTTCGAGACGAGTTTCGGCGAAGAGTAGGGGCAAACCTCACCGTGACAACNCTAGGAGGGTTTGACACATGCTACAATGTCCCAATAGTTGCACCCACAATAACGTTCATGTTCTCAGGCATGAACGTGACACTGCCACAAGACAACCTCCTCATACACAGCACTGCCGGCAGCACCACATGCTTGGCCATCGCAGCGGCGCCGGATAACGTGAACTCNGTGTTGAACGTGATAGCCAACATGCAGCAACAAAACCACCGTGTGCTCTATGACATCCCCAACTCAAGGCTTGGCGTTGCTCGTGAACTTTGCACTTAATAAGAAAAAAAAAGGTTAATATATATAATATTGTCGATTAATTGNCATAATTAGAAAGTTGTTTGGGTAATGGTATTTATTTGATCTTTCTTTGATGGGTTGGGTCACGGTGTGTTAGCATATTACTATAAGGTTTTATTGCTAACTACATGGTGGAAGATGTTTTGAGCCACTACGTGTGTATCAAATTAAATTCANGTTTCCTAAAGTTTCAGTTATATTTGTAGCTTAATTAGTAATGGTGGGGGAGTGTCACGGGTATATATACCTGTAGCTAGCTCTTGTGTCTTTTTTATTAATCAAGTTGATTGGAATTGATGATACAACCGTGCAAGTTCNCGGGTCGTGCAATAAATTTCCTATTCTTTGTTTTTTACTAACATTGGGCACCCCACCTTTTTATTTTATCTACAAAAGTGATGTTAAGGACAAATATTTTTCTANGATATTTTGATTGTATATGCTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00015	515478	518910	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004190 aspartic-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000015s00000842.1	PF14543.1	TAXi_N	94	232	3.30E-26
Glyur000015s00000842.1	PF14541.1	TAXi_C	255	404	1.50E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	418.153
SRR1783600	control	422.325
SRR1783602	moderate drought stress	139.205
SRR1811619	moderate drought stress	137.941

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	192.882
DRR006520	Root Summer glycyrrhizin high producing strain	191.561
DRR006521	Root Winter glycyrrhizin high producing strain	0.094
DRR006522	Root Winter glycyrrhizin high producing strain	0.113
DRR006523	Root Summer glycyrrhizin low producing strain	42.566
DRR006524	Root Summer glycyrrhizin low producing strain	43.144
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.006
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.112

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	136.473
SRR2868004	Drought Stress (root)	31.022
SRR2967015	Control (root)	46.312

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.125
SRR9715740	Leaf	1.028
SRR9715741	Leaf	2.961
SRR9715739	Root	93.845
SRR9715742	Root	40.826
SRR9715743	Root	46.318

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.801
SRR8749028	MeJA induced 9h	6.157
SRR8749029	MeJA induced 9h	7.986
SRR8749030	Uninduced	0.029
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.011

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	241.809
SRR8400027	Control - Root	201.517