Gene detail information of Glyur000015s00000837 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06730.1 | 2.00E-65 | Thioredoxin z |
| NR | XP_004498688.1 | 4.68E-105 | PREDICTED: thioredoxin-like protein CITRX, chloroplastic-like [Cicer arietinum] |
| COG | YP_006409554.1 | 3.00E-16 | thioredoxin [Alistipes finegoldii DSM 17242] |
| Swissprot | tr|Q9M7X9|CITRX_ARATH | 8.00E-84 | Thioredoxin-like protein CITRX, chloroplastic {ECO:0000303|PubMed:15131698} (Precursor) |
| trEMBL | tr|I3T3X6|I3T3X6_LOTJA | 4.00E-105 | Uncharacterized protein {ECO:0000313|EMBL:AFK47218.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00015 | 498090 | 501914 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000015s00000837.1 | PF00085.15 | Thioredoxin | 93 | 182 | 2.50E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.166 |
| SRR1783600 | control | 12.628 |
| SRR1783602 | moderate drought stress | 8.546 |
| SRR1811619 | moderate drought stress | 9.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.289 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.536 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.547 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.389 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.710 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.018 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.055 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.851 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.443 |
| SRR2868004 | Drought Stress (root) | 3.914 |
| SRR2967015 | Control (root) | 2.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.716 |
| SRR9715740 | Leaf | 20.794 |
| SRR9715741 | Leaf | 9.596 |
| SRR9715739 | Root | 4.891 |
| SRR9715742 | Root | 10.751 |
| SRR9715743 | Root | 8.956 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.500 |
| SRR8749028 | MeJA induced 9h | 4.957 |
| SRR8749029 | MeJA induced 9h | 6.222 |
| SRR8749030 | Uninduced | 2.435 |
| SRR8749031 | Uninduced | 0.854 |
| SRR8749032 | Uninduced | 0.662 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.352 |
| SRR8400027 | Control - Root | 16.332 |