Gene detail

Gene detail information of Glyur000015s00000833

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G12600.1	2.00E-59	nudix hydrolase homolog 16
NR	XP_003542815.1	6.55E-107	PREDICTED: nudix hydrolase 16, mitochondrial-like [Glycine max]
COG	YP_007147313.1	6.00E-13	putative NTP pyrophosphohydrolase [Cylindrospermum stagnale PCC 7417]
Swissprot	tr\|Q9LHK1\|NUD16_ARATH	1.00E-78	Nudix hydrolase 16, mitochondrial (Precursor)
trEMBL	tr\|I1M0Q4\|I1M0Q4_SOYBN	2.00E-107	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G26490.1}

Sequence

Transcript Sequence

>Glyur000015s00000833.1
AATCAACTCNAGAACCTTCTTCTCGACAAGGGTCCCACGAAATCGTGCCCTTCAATTATGCCCTTTAACCTCCATCCGCTGACCTCTTCCACCGCTTCCCGATTCGATGCTTCGCACTTACCCTGTTCCTCAGAGCCTCAACCAACCAAATCCTTCCAAACCAGTTACGTATCCACGTGTACACGCGTGACAGGTAGACGCACGCCAACTCAACGGTTCACGCACCACCAAATCCCCAAAAGTGGGACCCAAACGCTCACCACATCCTACGTGGCACTAACCGGATCCGCTGCAACCGCTTCCTGTCGCGCCTCTAACCCCATCCCTCAATTTTTCATTTTCATTTTTAATAATTTTTACATTTTTTTTCCAGCTTAGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGAAACTAACCCTAAAACGACAATGGTGTGGGAGGAGGGGTTGGGTGATGGTGCGCGGCGTCGTGGAGGATGATGATGGGTTGGAATCAGGTGCAGGCGAGAGCATTGTGATCCAATGGCAAAAGAGGGTTGTTTCGTTTTGTGACACAGAAGAGAGATTAGGTTTAGGTTGTGTGAGTGATGGCTGAATTGGTGGCTCGAACGGGTCGGCTTCAGCAACGATACGAGCATGGCTATCGCCTTATTGCTGGGTGTGTTCCATTTAGGTATAAAGATCGAGATGACTGTGGGCACTCTTGTTCTGAGAGGATTGTTGAAGTGCTTATGATTAATTCACCTAGTGGACCAGGTCTTTTGTTTCCGAAGGGGGGTTGGGAGAATGATGAAACTGTAGAGGAAGCTGCTGTAAGAGAAGCNATTGAAGAAGCAGGAGTTCGTGGAGACCTAATGGATTTTCTGGGGTACTATGAATTTAGGAGTAAGACNCACCAAGATGAGTTCAGTCCAGAAGGTTTATGTAAAGCAGCAATGTTCGCCTTGTTNGTCAAGGAGGAACTTGAGTCATGGCCTGAACAAAGTACCAGAAATAGGAGTTGGCTGGCAGTACCAGAGGCACTTGGAAGCTGCCGGCATGCATGGATGAGGGATTGCCTCCAATGCTTCTCTAAATGGCATGAAGATAGGTTGGTGAGTGCAAGGGAGGATCAAGACTGATATGCTGACTCTGCTCGTTTATAAGGGGGAGTACTTACATCTTCACTGATTGAAAAGATTAATTACATTTAGAAAAAAGGATATTTCTGATCAGGATTAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00015	476743	479211	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000015s00000833.1	PF00293.23	NUDIX	32	156	2.50E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.003
SRR1783600	control	4.131
SRR1783602	moderate drought stress	2.911
SRR1811619	moderate drought stress	3.010

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.331
DRR006520	Root Summer glycyrrhizin high producing strain	10.522
DRR006521	Root Winter glycyrrhizin high producing strain	2.812
DRR006522	Root Winter glycyrrhizin high producing strain	2.718
DRR006523	Root Summer glycyrrhizin low producing strain	8.930
DRR006524	Root Summer glycyrrhizin low producing strain	9.138
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.017
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.827

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.336
SRR2868004	Drought Stress (root)	20.428
SRR2967015	Control (root)	18.049

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.510
SRR9715740	Leaf	6.475
SRR9715741	Leaf	6.052
SRR9715739	Root	2.532
SRR9715742	Root	3.899
SRR9715743	Root	3.615

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	46.088
SRR8749028	MeJA induced 9h	36.502
SRR8749029	MeJA induced 9h	36.360
SRR8749030	Uninduced	20.578
SRR8749031	Uninduced	16.718
SRR8749032	Uninduced	11.939

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.383
SRR8400027	Control - Root	22.788