Gene detail information of Glyur000015s00000830


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G15220.12.00E-54Ribosomal protein L27 family protein
NRXP_007148915.11.18E-94hypothetical protein PHAVU_005G024900g [Phaseolus vulgaris]
COGNP_230090.11.00E-3050S ribosomal protein L27 [Vibrio cholerae O1 biovar El Tor str. N16961]
Swissprottr|A0T0G4|RK27_PHATC5.00E-2650S ribosomal protein L27, chloroplastic {ECO:0000255|HAMAP-Rule:MF_00539}
trEMBLtr|V7BSH1|V7BSH1_PHAVU4.00E-95Uncharacterized protein {ECO:0000313|EMBL:ESW20909.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00015457606461183-


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006412  translation


cellular_component

GO:0005622  intracellular

GO:0005840  ribosome


molecular_function

GO:0003735  structural constituent of ribosome

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000015s00000830.1PF01016.14Ribosomal_L27421222.20E-38
Glyur000015s00000830.2PF01016.14Ribosomal_L27421222.20E-38


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.071
SRR1783600control13.420
SRR1783602moderate drought stress11.093
SRR1811619moderate drought stress10.640

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.908
DRR006520Root Summer glycyrrhizin high producing strain15.422
DRR006521Root Winter glycyrrhizin high producing strain12.164
DRR006522Root Winter glycyrrhizin high producing strain12.205
DRR006523Root Summer glycyrrhizin low producing strain14.691
DRR006524Root Summer glycyrrhizin low producing strain14.567
DRR006525Leaf Summer glycyrrhizin high producing strain8.275
DRR006526Leaf Summer glycyrrhizin high producing strain8.310

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)43.868
SRR2868004Drought Stress (root)28.730
SRR2967015Control (root)28.369

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf22.138
SRR9715740Leaf23.136
SRR9715741Leaf22.535
SRR9715739Root13.277
SRR9715742Root14.858
SRR9715743Root10.735

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h67.059
SRR8749028MeJA induced 9h44.605
SRR8749029MeJA induced 9h58.281
SRR8749030Uninduced24.988
SRR8749031Uninduced14.419
SRR8749032Uninduced11.071

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root39.485
SRR8400027Control - Root40.460

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved