Gene detail information of Glyur000015s00000829 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_004498685.1 | 2.76E-42 | PREDICTED: uncharacterized protein LOC101489304 [Cicer arietinum] |
| Swissprot | tr|O80669|SIB2_ARATH | 5.00E-09 | Sigma factor binding protein 2, chloroplastic (Precursor) |
| trEMBL | tr|I3S3N2|I3S3N2_LOTJA | 2.00E-41 | Uncharacterized protein {ECO:0000313|EMBL:AFK34874.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00015 | 454937 | 455437 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000015s00000829.1 | PF05678.9 | VQ | 28 | 57 | 4.20E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.519 |
| SRR1783600 | control | 1.455 |
| SRR1783602 | moderate drought stress | 3.361 |
| SRR1811619 | moderate drought stress | 2.914 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.888 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.966 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 45.497 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 42.883 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.110 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.301 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.314 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.650 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.138 |
| SRR2868004 | Drought Stress (root) | 5.002 |
| SRR2967015 | Control (root) | 10.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.386 |
| SRR9715740 | Leaf | 9.623 |
| SRR9715741 | Leaf | 17.096 |
| SRR9715739 | Root | 6.691 |
| SRR9715742 | Root | 2.779 |
| SRR9715743 | Root | 2.613 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.806 |
| SRR8749028 | MeJA induced 9h | 17.063 |
| SRR8749029 | MeJA induced 9h | 7.345 |
| SRR8749030 | Uninduced | 5.466 |
| SRR8749031 | Uninduced | 26.079 |
| SRR8749032 | Uninduced | 20.663 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.496 |
| SRR8400027 | Control - Root | 3.657 |