Gene detail

Gene detail information of Glyur000015s00000828.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G12250.2	2.00E-116	TGACG motif-binding factor 6
NR	XP_007133721.1	0	hypothetical protein PHAVU_011G203400g [Phaseolus vulgaris]
Swissprot	tr\|Q41558\|HBP1C_WHEAT	0	Transcription factor HBP-1b(c1) (Fragment)
trEMBL	tr\|Q93XA1\|Q93XA1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW05715.1}

Sequence

Transcript Sequence

>Glyur000015s00000828.2
TAAAAATGTACTCAGAAGCAGAACAAGACAGACACACAGAGAGAGTGGACTCACCATTTCTCTCTCCTCTTTCCCATCACTTTAATCCAACAACAATAATAATAATCCACTAAAAAACTTTGAACAGATACCATCATCGTTCATCATCACCACCCGCATCATCGTCATCATCATCACCACAATTCCAAGGTTTTATATTTTGTTGGGCAGCAAGGAAACTGAGGATAGGATGGAGATGGTAACCTATACAGAGGGAAGCACAATTGATTCTTTTCGTGTGTCTGACTTTGATCAATCACTTGGAAATCGCTTAGAGGATGGTGTTGACCTCAGTGGAAACTCAGTTTTTAACTCCCTGAAAGTAAGTAGCCAAACAATTTCTCGTGGTCTTGTTCACATTGGCACTTTTGACAAGTTGCCAGCTTCACTTGATAAAAGCCCATTGACAAACGGAACAGACCAACAGAGCTTGCAATTACAAAAGGCTCAATCATCGAATCTGGTCCCAATATCAAGTGGTAATACAGAAAATCAGGAAGAGTCTGCCATGGCTGGTTCCAGTCCTAGAACTGATATCTCTACAGANGTTGACACTGATGAGAAGAATCAGCGGTTTGATGGAAGTCATTCCCTTGCTGCCGTCGCTTCTGACTCCAGTGACAGATCAAAGGATAAAACAGATCAAAAGACTCTCCGCAGGCTAGCTCAGAACCGCGAGGCTGCAAGAAAAAGCCGGTTGAGAAAGAAAGCTTATGTGCAACAGTTGGAAAGTAGTCGTCTGAAGTTGACCCAACTGGAGCAAGAGCTTCAGCGAGCTAGGCAGCAGGGAGTCTTTATATCAAGCTCAGGTGATCAAGCACAATCAATGAGTGGAAATGGGGCCATGGCATTTGATGTAGAATATGCGAGGTGGCTTGAAGAGCAGAATCGGCAAATTAATGAGCTAAGAGGAGCTGTAAATTCTCACGCAAGTGATACAGAACTTCGCATGATTATTGATGGTATAATGGCAAATTATGATGAGATATTTAGGCTGAAGGGCATTGCAGCTAAGGCTGATGTCTTCCATTTGTTGTCTGGCATGTGGAAAACACCAGCTGAGAGGTGTTTTCTTTGGCTTGGCGGTTTTCGATCATCTGAACTCCTCAAGCTTCTGGTAAATCAATTGGAGCCTCTCACAGAGCAGCAGTTAGTGGGTATTACCAACTTGCAGCAATCTTCCCAACAGGCAGAAGATGCTTTGTCTCAGGGCATGGAAGCATTGCAACAGTCCCTTTCTGAGACATTGTGCACTGGATCACTTGGTTCCTCTGGTTCATCAGGGAATGTGGCTAATTACATGGGTCAAATGGCTATGGCCATGGGTAAGCTAGGGACACTTGAGGGGTTTATTCGCCAGGCTGACAACTTGCGCCAGCAGACACTGCAACAAATTCACCGTATATTGACGACTCGCCAATCAGCTCGCGCGCTCCTCGCAATACACGACTACTTTTCTCGGTTGCGTGCTCTTAGCTCCCTTTGGCTTGCCCGCCCAAGAGATTGATGGGTGGTAAATAGTCTGTCAAATTCATATTCGTGGATCTGGCACCACTAAAATTTTTTCATCATAGGTTTTACTCCTGATTTTGTTGTGTTGTAGTTTTCACATTACTGACATTAGTGTTCACCAAGTCACATAATCTAGAAACTGAATTGGTGACAACAGTATTTATCTCGTTTATTACTAATTATATTGTCCATTGTCCATTGTAATAGAAGCTGAAGAGCTTTGTGACCCTGTCTTACAAAATAGTTGGGATGTGATAAATTTAAATGTTTGGTTCAGTTGCTACAGTTTTTCCATGCATCTGAATTAGAAGAACTTTGTGATTTCACAAGCAAATTGCTCGGTTTATTCTTCCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00015	447031	452948	-

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006351 transcription, DNA-templated

GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000015s00000828.2	PF00170.16	bZIP_1	152	193	2.70E-07
Glyur000015s00000828.2	PF14144.1	DOG1	234	312	5.20E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.079
SRR1783600	control	14.153
SRR1783602	moderate drought stress	14.661
SRR1811619	moderate drought stress	14.555

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.867
DRR006520	Root Summer glycyrrhizin high producing strain	18.963
DRR006521	Root Winter glycyrrhizin high producing strain	28.965
DRR006522	Root Winter glycyrrhizin high producing strain	27.674
DRR006523	Root Summer glycyrrhizin low producing strain	27.726
DRR006524	Root Summer glycyrrhizin low producing strain	27.289
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.701
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.159

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	39.509
SRR2868004	Drought Stress (root)	46.990
SRR2967015	Control (root)	54.684

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.610
SRR9715740	Leaf	35.224
SRR9715741	Leaf	36.016
SRR9715739	Root	10.491
SRR9715742	Root	22.786
SRR9715743	Root	21.438

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.918
SRR8749028	MeJA induced 9h	38.321
SRR8749029	MeJA induced 9h	13.174
SRR8749030	Uninduced	35.136
SRR8749031	Uninduced	14.787
SRR8749032	Uninduced	15.937

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.285
SRR8400027	Control - Root	38.941