Gene detail

Gene detail information of Glyur000015s00000808

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27670.1	2.00E-47	heat shock protein 21
NR	XP_006581014.1	1.53E-126	PREDICTED: uncharacterized protein LOC100798019 isoform X1 [Glycine max]
COG	YP_002500023.1	7.00E-20	heat shock protein Hsp20 [Methylobacterium nodulans ORS 2060]
Swissprot	tr\|P09886\|HS21C_PEA	5.00E-120	Small heat shock protein, chloroplastic (Precursor)
trEMBL	tr\|I1KAZ9\|I1KAZ9_SOYBN	6.00E-127	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G14000.1}

Sequence

Transcript Sequence

>Glyur000015s00000808.1
CAAGAACCTAATTACATTCCCTACTCAACACTCATGATGTGAAGTCACTTTGGGAGATCATTCCCGAAACCATCAGGGGTACTGAGATAAAAACAAAAACAAATGGCGATTGATAAGTGTTGGGTCCAGAACTTTCACACTTCCTCTCAAACTCTCAAGACCCTTCTCCACCTTTCACACCCACCCTCTATATATATTCACAATCCTCACTCCCCTACTCTCATCAACAATAACAATTGAATTCCCTTCTTGCAATTCTTGTTTGTTTCTCAAAACCACTATCTTCTATTATAACTATGGCTCAAGCAACACTGTCGCTATCCACTACTACTTCACCTCTGCTGTCACAAAAAGCAGGGTACTCTACTAAGACGCGCAACAATGTTATTGCACCTTGCATGGCCTCATTTCCATCATCATCATCAAGGAGACAATTGCCAAGGCTGAGAAGAAGGGTGAGAGCAGAGGCTGCTGGTGATAACAAAGACAATTCATTGGAAGTGCATCATGTTAACAAAGGCGACAACCAAGGAACCGCCGTAGAGAGAAAGCCTCGCAGACTTGCCATGGATATTTCACCATTTGGCCTTTTGGATCCATGGTCATCCATGAGAAGCATGCGGCAGATGCTGGACACAATGGACCGAATTTTCGAAGATGCCATGACATTCCCAGGGAGAAACCTTGGAGGAGGAGGAGGAGGAGGGGAGATCCGTACACCTTGGGACATCAAAGATGAAGAGCATGAAGTGAGGATGCGTTTTGACATGCCGGGTCTTTCCAAGGAAGATGTCAAGGTATCAGTGGAGGACGATGTGCTTGTCATAAAAGGTGAACACCACAAGAATGAGGAAGGTGGTGGTGGAGAAGAAGATTCTTGGTCAAGCAGTAAGAGCTATAGTTCCTATGACACCCGTCTCAGGCTTCCTGATAACTGTGAGAAGGATAAGGTTAAGGCAGAGTTGAAAAATGGTGTGCTTTATATCACCATTCCTAAGACCAAAGTTGAGCGCAAGGTTATTGATGTGGAAATTCAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00015	349798	351384	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000015s00000808.1	PF00011.16	HSP20	144	247	4.90E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.830
SRR1783600	control	0.839
SRR1783602	moderate drought stress	11.100
SRR1811619	moderate drought stress	10.903

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.651
DRR006520	Root Summer glycyrrhizin high producing strain	3.620
DRR006521	Root Winter glycyrrhizin high producing strain	0.751
DRR006522	Root Winter glycyrrhizin high producing strain	0.732
DRR006523	Root Summer glycyrrhizin low producing strain	4.469
DRR006524	Root Summer glycyrrhizin low producing strain	4.830
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.356
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.357

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.113
SRR2868004	Drought Stress (root)	0.769
SRR2967015	Control (root)	0.940

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.188
SRR9715740	Leaf	0.466
SRR9715741	Leaf	0.056
SRR9715739	Root	0.598
SRR9715742	Root	2.910
SRR9715743	Root	1.632

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.065
SRR8749029	MeJA induced 9h	0.086
SRR8749030	Uninduced	0.183
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.119

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.517
SRR8400027	Control - Root	3.517