Gene detail

Gene detail information of Glyur000015s00000806

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G46780.1	2.00E-40	RNA-binding (RRM/RBD/RNP motifs) family protein
NR	XP_003526753.1	2.31E-130	PREDICTED: RNA-binding protein 24-A [Glycine max]
COG	YP_003267833.1	5.00E-15	RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q9SHZ6\|UBA1A_ARATH	7.00E-19	UBP1-associated proteins 1A
trEMBL	tr\|C6T8L2\|C6T8L2_SOYBN	7.00E-129	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G40770.5}

Sequence

Transcript Sequence

>Glyur000015s00000806.1
TTTCTCTGTTTCTCTGCTTTTACTCCCTTTATATTTTCAACCCTTCGTTACTATTCATAATAAAGTTTCTTGTTAAGGGAATCTTTGTTGTAGAATCTGAGGAAATATTATTATCAGTATGAAAATCAAGTAGTTTTTCTTTTCTTCTCTAGAATGAACGAGAATCACTCACTGGCTTTAGCACATGTTGATGGGAAGATTTTCCTCTGGAGGAATTGATGTGATTGATTGTTTACCGTTTTCACACTTTACAACCAACCAAACGGCTATTCTGACTTTTCGATCTGTCTGTGTCTCTTCGTTTATTCGACGGTTCTTTTAAGTCATTCAGGGATTTTTTGTGAATTGAATTCAGAATATGTCACAGCCAAGGCAAAACAACAAGATGATGATGATGAGTCCGAACGTTGCCAAACAAGTTGGTGACACAACACATACTAAGATNTTTGTTGGAGGGTTAGCTTGGGAGACTAAGAGAGACACACTGAAACGCTATTTTGATCAGTTTGGGGAGATCTTAGAAGCTGTTGTCATCACTGACAGAAACACTGGAAGATCAAAAGGATATGGCTTTGTGATCTTCAAGGACCCAAATTCTGCAATACTAGCTTGCCAGAATCCATATCCTGTGATTGATGGAAGGAGGGCTAATTGTAATCTTGCAGCTCTAGGTGCACAAAAACCTGATCCATCTATAACAGGAAGGCAGAAATTCAATAGCCCTTCATGGAATACGGTACCGATCCAATTTCAAGGCTCCTCCACTTATTATAATCAGCATATACCACAGTATACATTTCCATATCCACCCTATAGGTACCCTGCTTATCCTCGCCCACAAGACATTTATGGAATGAACTATTATAATGTGTACAGTGGACAGCAGTTTCCATTTCGCTGGTTTCNAGCTTATAGCCAACCTTTCTATGGTCTTAGCAGACAACAGTTTGTTCCAACAGCACATCTGAAAAAGACACAAACAACTGACATGTCACCTCAGGAGTTTGGCATGTCAGAAGCTATTTCACCTTCTCCTTCAATTTCCAGCACTGGATTAATCACAGAAACAGTAGGTGCAACAGAGGTGCTAGGACCTCCCCAAGATCAGAAATCTTCAGCTTAAGCTCGTGATGAGTGGCTTCCATCAATTGACTAGAAGAAAGAAAGCAAAATGAAAAATGACACTGCTCAAATAAACCAGAAAGCTCTAAGAACATTTTCCAATGATGTGGTCCAGCAAAGTTACTATAAATCAAGCAATAACATATTGAGGTGATCTTAGAGGCCAGTCACTGATGAAATGAGTCACGGATTTGTTCATTGTCTAGAATTTTTATTTTTATTTTACTTTGAGAATTCTGATGCAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00015	337964	340123	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000015s00000806.1	PF00076.17	RRM_1	30	86	2.10E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.213
SRR1783600	control	17.482
SRR1783602	moderate drought stress	18.884
SRR1811619	moderate drought stress	18.420

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.916
DRR006520	Root Summer glycyrrhizin high producing strain	14.922
DRR006521	Root Winter glycyrrhizin high producing strain	6.825
DRR006522	Root Winter glycyrrhizin high producing strain	6.838
DRR006523	Root Summer glycyrrhizin low producing strain	19.035
DRR006524	Root Summer glycyrrhizin low producing strain	19.276
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.441
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.439

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.625
SRR2868004	Drought Stress (root)	21.937
SRR2967015	Control (root)	32.167

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.290
SRR9715740	Leaf	3.253
SRR9715741	Leaf	7.155
SRR9715739	Root	0.800
SRR9715742	Root	8.055
SRR9715743	Root	6.206

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.364
SRR8749028	MeJA induced 9h	0.424
SRR8749029	MeJA induced 9h	0.935
SRR8749030	Uninduced	0.916
SRR8749031	Uninduced	1.543
SRR8749032	Uninduced	0.532

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	45.848
SRR8400027	Control - Root	41.504