Gene detail

Gene detail information of Glyur000015s00000802

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G49430.3	3.00E-77	SER/ARG-rich protein 34A
NR	XP_006577814.1	6.02E-139	PREDICTED: uncharacterized protein LOC100786491 isoform X3 [Glycine max]
Swissprot	tr\|A2RVS6\|SR34A_ARATH	5.00E-111	Serine/arginine-rich splicing factor SR34A
trEMBL	tr\|I1JYJ1\|I1JYJ1_SOYBN	2.00E-139	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G40740.2}

Sequence

Transcript Sequence

>Glyur000015s00000802.1
CCCTTAAGCTTACTCTCTTTGCTCGCTCGCTCGAATTCGAAAGGATCGTGTTTGCCAGCTTCTGCTTCAGCTCCGTGAAGGCTCGATTGGGTGCTCAAGCTGTTCCCTTTCCGCTTTGGAGCATCTTGGAGCAAATGAGCAATGGAGCTTGTGGAGCACGGCTCATCTCAAGGATTGCTCTATTGAGGAACTATATAACTTCTATCAAATATGAGTGGTCGCTTTTCTCGCACAATTTATGTTGGCAACCTGCCATCTGATATAAGAGAATCCGAAATTGAAGATCTATTCTACAAGTATGGCCGCATAATGGATATTGAATTGAAGATTCCTCCTCGCCCTCCATGTTATTGCTTTGTTGAGTTTGACAATGCTCGAGATGCAGAAGAAGCAATTCGGGGTCGAGATGGATACAACTTCGATGGTTGTCGGTTAAGGGTGGAACTTGCCCATGGTGGTAGAGGGCCATCATCAAGTGATCGCCGTGGGTATGGTGGTGGAGGTGGAGGAGGAGGCGGAGGAGGAGGAGGAGGAGGTGGGGGCCGTTTTGGCGTCTCACGCCATTCTGAATATCGAGTTATTGTTCGTGGACTCCCCTCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGNGGAAAGCTGGTGATGTTTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGGGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAATATGCTATTCGGAAACTGGATGACACTGAGTTTAGAAATCCTTGGGCAAGATCTTATATTCGGGTGAGGAAGTACGAGAGCAGTCGTTCAAGGAGCCGCAGCAGAAGCCCCAGCAGGATAGATCTTTGGAGCGATCTGTGTCTAGGTCACGGTCTAGATCCAGGTCCAGATCAGCATCGCCAATCAAATCTTCCAGGTGCTGTCGGACTAGTGGTTGATTTTCTGACAAGTGCAGGTGGTTCTCTGGAGCTACGGTCCTATTCTGGCCAGTATTGGAATTATATTTGAGTTGGTTTAAATTGTTTAATTGAAAAAACATTATTGTACCAGAGCTGTTTTCGTGGTATTTGTTNTGTTATCAGTTTGGTGATTTTGTAGGACCCAAACTTAACTTGCTGCTACCATTTTAGTCCTGTTTCAATTAAACAAGAANGTCGTATATTAGCTTAACGGTTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00015	301230	306499	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000015s00000802.1	PF00076.17	RRM_1	9	76	1.70E-18
Glyur000015s00000802.1	PF00076.17	RRM_1	123	185	1.70E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	172.526
SRR1783600	control	172.998
SRR1783602	moderate drought stress	234.975
SRR1811619	moderate drought stress	234.054

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	199.934
DRR006520	Root Summer glycyrrhizin high producing strain	198.801
DRR006521	Root Winter glycyrrhizin high producing strain	175.739
DRR006522	Root Winter glycyrrhizin high producing strain	171.900
DRR006523	Root Summer glycyrrhizin low producing strain	236.569
DRR006524	Root Summer glycyrrhizin low producing strain	236.220
DRR006525	Leaf Summer glycyrrhizin high producing strain	48.532
DRR006526	Leaf Summer glycyrrhizin high producing strain	48.979

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	118.719
SRR2868004	Drought Stress (root)	115.341
SRR2967015	Control (root)	124.883

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	60.349
SRR9715740	Leaf	66.218
SRR9715741	Leaf	75.178
SRR9715739	Root	196.963
SRR9715742	Root	147.743
SRR9715743	Root	151.833

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	115.977
SRR8749028	MeJA induced 9h	71.301
SRR8749029	MeJA induced 9h	84.268
SRR8749030	Uninduced	46.223
SRR8749031	Uninduced	30.976
SRR8749032	Uninduced	66.030

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	142.375
SRR8400027	Control - Root	137.085