Gene detail information of Glyur000015s00000798 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G24510.1 | 1.00E-20 | 60S acidic ribosomal protein family |
| NR | KEH38255.1 | 1.26E-35 | 60S acidic ribosomal protein [Medicago truncatula] |
| Swissprot | tr|P52855|RLA1_MAIZE | 1.00E-31 | 60S acidic ribosomal protein P1 |
| trEMBL | tr|A0A072VJD3|A0A072VJD3_MEDTR | 5.00E-36 | 60S acidic ribosomal protein {ECO:0000313|EMBL:KEH38255.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00015 | 283606 | 285392 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000015s00000798.1 | PF00428.14 | Ribosomal_60s | 22 | 108 | 8.90E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 135.837 |
| SRR1783600 | control | 136.471 |
| SRR1783602 | moderate drought stress | 134.364 |
| SRR1811619 | moderate drought stress | 134.098 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 371.127 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 365.201 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 195.504 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 190.741 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 342.816 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 336.935 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 100.906 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 100.865 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 521.677 |
| SRR2868004 | Drought Stress (root) | 295.757 |
| SRR2967015 | Control (root) | 270.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 290.696 |
| SRR9715740 | Leaf | 277.100 |
| SRR9715741 | Leaf | 240.732 |
| SRR9715739 | Root | 546.842 |
| SRR9715742 | Root | 382.725 |
| SRR9715743 | Root | 397.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 655.942 |
| SRR8749028 | MeJA induced 9h | 226.979 |
| SRR8749029 | MeJA induced 9h | 389.571 |
| SRR8749030 | Uninduced | 61.778 |
| SRR8749031 | Uninduced | 21.251 |
| SRR8749032 | Uninduced | 111.144 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 569.284 |
| SRR8400027 | Control - Root | 431.805 |