Gene detail information of Glyur000015s00000797.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G12560.2 | 1.00E-24 | F-box and associated interaction domains-containing protein |
| NR | XP_008344533.1 | 7.49E-46 | PREDICTED: F-box protein CPR30-like [Malus domestica] |
| Swissprot | tr|Q9SU30|CPR30_ARATH | 9.00E-29 | F-box protein CPR30 |
| trEMBL | tr|B9T3A0|B9T3A0_RICCO | 6.00E-42 | Ubiquitin-protein ligase, putative {ECO:0000313|EMBL:EEF29668.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00015 | 280607 | 281809 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000015s00000797.1 | PF00646.28 | F-box | 16 | 52 | 4.50E-07 |
| Glyur000015s00000797.1 | PF07734.8 | FBA_1 | 230 | 328 | 2.80E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.044 |
| SRR1783600 | control | 7.195 |
| SRR1783602 | moderate drought stress | 6.164 |
| SRR1811619 | moderate drought stress | 6.544 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.953 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.127 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.742 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.722 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 36.122 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 35.211 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.006 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.040 |
| SRR2868004 | Drought Stress (root) | 10.664 |
| SRR2967015 | Control (root) | 18.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.036 |
| SRR9715740 | Leaf | 12.474 |
| SRR9715741 | Leaf | 14.729 |
| SRR9715739 | Root | 24.073 |
| SRR9715742 | Root | 15.318 |
| SRR9715743 | Root | 19.812 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.048 |
| SRR8749028 | MeJA induced 9h | 10.854 |
| SRR8749029 | MeJA induced 9h | 3.460 |
| SRR8749030 | Uninduced | 3.704 |
| SRR8749031 | Uninduced | 0.176 |
| SRR8749032 | Uninduced | 1.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.880 |
| SRR8400027 | Control - Root | 5.865 |