Gene detail

Gene detail information of Glyur000015s00000790.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54180.1	2.00E-132	plastid transcriptionally active 15
NR	XP_004502758.1	0	PREDICTED: uncharacterized protein LOC101513939 [Cicer arietinum]
trEMBL	tr\|G7J8Z8\|G7J8Z8_MEDTR	0	Plastid transcriptionally active 15 protein {ECO:0000313\|EMBL:AES72631.1}

Sequence

Transcript Sequence

>Glyur000015s00000790.1
GATGATTTTCCTTTCTCCTCCTTATTTTACCCGTCACAATCAACACAAACCATACGTGCGGGGTGCAGCGCAGCAACCAGCATCCCCTTGTTGCGAGTAACTTTGCAGAAATGGCGTTAGCACTCACTCTGTTGTTGGCAAATTGTTCATCTTGTCGTTCTTCTTCNATCACGTTTTTTCATCCATACCCACTGTACCCTTCACACTCTCTTCAACTCTNCCTCCGTTCACCTTCAACCTCTTATCAACCTCGACCCTTGTTCTCCCTCACCCTCCTCAGACCACAACCACCAAACAACGACTACTTCCGTTTCCAACCCTCCACTCATGCATTCTCCCAGTGCCGCTGCAGCACTATCCACGCCGCCAATGTCGCCGCTGAATTCGGGATGCTTATCTCTTTGTTTGGAGAAATGGGGATCGACTTCGAGGAAACCCAAGTGCTCTTGCTCAATGCCCCTGAAATTACCTCTGTGCCACTGGATTCACTGAGTGCTCGGGTTCTCTCTTTGCAGTCTCTGGGGTTGGATCGTCTTTCCATGCATCAATTGGTTACAGAGNGCCCAACTGTGCTAACTGCTAAGGAAATTGACCCCTTGTTGACCTTTTTCAGAGATGAATTACAAGGACAGCTTGAACAAGCACAGGTGAAGCGTCTCTTATCTGCCAATGAACCAAAATTCTTGGCCGGTTTTCCTCAGAAGGTTCAACTGCTCATTGACCGTGGTGTTCCTGTTGACAAGATTGTCCATGTGCTCAACAAAGTGAATTTGTCAAAGGCAATGTGTCATAAGTCAATGGATGAAATTGACAGAATCATAGCTTTCTTGGAACCCTTTGGGGGTGCTGGTTTGATTGTGAGGCACCCTGCAATCCTCAACTATGATTTGGATCATCAGTTGGTTCCGAGGATCAAGTTCCTCGCGGAGCTTAGTGGAGGAGATGTGGATGCCACTGGGAAAGTGCTGCATAAGTTCCCCATTATCCTGAATTATAGTGTGGAACATGTTGAGGGACATGTACAGTTCCTGAGGTCTTTTGCAGAACTTGATGACCAACAAATATTTAGGATAATGTTAGTGTTTCCAGCTATCATTACCAATAGCAGAGAGAGGAAACTGCGTCCTAGGATACAATTTCTCAAGGAATGTGGGTTAGACTCGGGCGAAATCTTCAAGTTCTTGATTAAAGCACCTTTGTTTTTAAGCAGTTCATTCCGCGAGAACATCGCCTATAAGCTTGTGCTTCTGGTCAAGATTGGATATAAATATAGGACCAAAGACTTGGCAATGGCGATTGGGTCTTCCACTAGAATAAGCTGTGAGAACATGCAAAAGGTGATAAGTCTATTCTTGAATTATGGGTTCTCATGTGAAGACATTTTTGCTATGAGCAAGAAGCATCCACAGATACTGCAGTATAATCATGCTTCTCAAGAGAAGAAGCTGAAGTACTTGGTAGAGGAGATGAACCGTGACATTCAGGAGTTGCTGCTGTTTCCTGCATTTCTTGGTTACAAGTTGGATGACAGAATTAAGCATAGGTATGAAATAAAGAAGAGCACAAGGGGGGAACAAATGTCTCTCAATAAGCTTTTAACTGTTTCATGTGAGACGTTCACTGGCAAACAACGAAAAAAGGCCTCCGCTGTAGAATCTGAATTGAAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00015	256258	258150	-

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005739 mitochondrion

molecular_function
GO:0003690 double-stranded DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000015s00000790.1	PF02536.9	mTERF	127	369	3.20E-13
Glyur000015s00000790.1	PF02536.9	mTERF	314	503	1.10E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.088
SRR1783600	control	5.052
SRR1783602	moderate drought stress	3.945
SRR1811619	moderate drought stress	4.017

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.451
DRR006520	Root Summer glycyrrhizin high producing strain	4.243
DRR006521	Root Winter glycyrrhizin high producing strain	2.192
DRR006522	Root Winter glycyrrhizin high producing strain	2.022
DRR006523	Root Summer glycyrrhizin low producing strain	3.051
DRR006524	Root Summer glycyrrhizin low producing strain	3.112
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.906
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.805

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.535
SRR2868004	Drought Stress (root)	2.779
SRR2967015	Control (root)	2.747

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.496
SRR9715740	Leaf	1.044
SRR9715741	Leaf	0.771
SRR9715739	Root	2.601
SRR9715742	Root	2.498
SRR9715743	Root	2.896

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.161
SRR8749028	MeJA induced 9h	4.507
SRR8749029	MeJA induced 9h	3.611
SRR8749030	Uninduced	1.019
SRR8749031	Uninduced	0.525
SRR8749032	Uninduced	0.574

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.599
SRR8400027	Control - Root	4.175