Gene detail information of Glyur000015s00000788 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G24490.1 | 2.00E-83 | 30S ribosomal protein, putative |
| NR | XP_003526761.1 | 1.27E-146 | PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Glycine max] |
| COG | YP_007101693.1 | 7.00E-42 | SSU ribosomal protein S30P,sigma 54 modulation protein [Pseudanabaena sp. PCC 7367] |
| Swissprot | tr|P19954|PRSP1_SPIOL | 2.00E-103 | Ribosome-binding factor PSRP1, chloroplastic (Precursor) |
| trEMBL | tr|I1KB15|I1KB15_SOYBN | 5.00E-147 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G14140.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00015 | 251795 | 254389 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000015s00000788.1 | PF02482.14 | Ribosomal_S30AE | 84 | 178 | 3.80E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.611 |
| SRR1783600 | control | 8.739 |
| SRR1783602 | moderate drought stress | 5.833 |
| SRR1811619 | moderate drought stress | 5.891 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.569 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.968 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.725 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.375 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.123 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.016 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 29.965 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 30.496 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.045 |
| SRR2868004 | Drought Stress (root) | 6.862 |
| SRR2967015 | Control (root) | 10.358 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 47.047 |
| SRR9715740 | Leaf | 32.242 |
| SRR9715741 | Leaf | 40.138 |
| SRR9715739 | Root | 1.594 |
| SRR9715742 | Root | 4.128 |
| SRR9715743 | Root | 4.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.630 |
| SRR8749028 | MeJA induced 9h | 9.963 |
| SRR8749029 | MeJA induced 9h | 5.154 |
| SRR8749030 | Uninduced | 3.893 |
| SRR8749031 | Uninduced | 1.470 |
| SRR8749032 | Uninduced | 1.396 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.694 |
| SRR8400027 | Control - Root | 8.144 |