Gene detail

Gene detail information of Glyur000015s00000769

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54130.2	0	Calcium-binding endonuclease/exonuclease/phosphatase family
NR	XP_004502781.1	0	PREDICTED: uncharacterized calcium-binding protein At1g02270-like isoform X1 [Cicer arietinum]
Swissprot	tr\|O81916\|YC22_ARATH	5.00E-172	Uncharacterized calcium-binding protein At1g02270
trEMBL	tr\|I1KB30\|I1KB30_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G14300.1}

Sequence

Transcript Sequence

>Glyur000015s00000769.1
CCACTGTCTCCTGGGAAGGATAAAAAAGGATGCTTTTTCCAACAGGGTCTTCGCTTTTGTGAGGAATTGCGCAAATATATTATTGTTTATTATCATTTGTCATCATCATCACCATTATCGTGGTTGTATATATAGGGACAGCAATATTGGGGGGGTTTTGGGACGTAGATTGAGAATGGCGAAGTGGGCTAAGAGGATGGGAAGGATTTCAAGGATTGGGAGTTTTGCAATTGCTTCTTCCATAAATGAAAACCAGCAACAACCTTGCATTACCTGCACTACTTTCAACATTCTTGCTCCCATTTACAAGCGCATCAATGATGAGGACCCGAGTTGTCGTGAGAGCGACTACAGAACTTATTGGTTAGCCAGGAATCACAGGATATTGGATTGGTTGTTGAATGAAAGGTCTTCCATTATTTGTCTTCAGGAGTTTTGGGTAGGAAACGAAGAGCTTGTTAATTTGTATGAGAAAAGACTTGGTGATGCTGGTTATGTTAGTTTCAAGCTTGGAAGGACTAACAACCGTGGAGACGGACTTCTGATAGCAGTGCAAACGGAATACTTCAATATTCTTAATTATAAGGAGTTGCACTTCAATGACATTGGTGATCGTGTGGCTCAACTGCTACATGTTGAACTGGCTCTTCCATTTTCACAGTGGCGAAACGGTGANATTAGGCAGGAAATTCTGATTGTTAACACTCACCTGCTATTTCCTCATGATGCAACTCTATCTCTTAATGATTTCCAACTCAAGCCAATGCCAATCATGCTATGCGGTGACTGGAATGGAAGCAAACGTGGACANGTTTACAAGTTCCTGAGGTCTCAGGGTTTTGTATCATCTTATGATACTGCACATCAGTACACTGATGCAGAGGCTGACAAGTGGGTTAGCCACCGCAACCATCGGGGAAATATATGTGCTGTTGATTTTATTTGGCTTCTAAATCCTGACAAATATCGAAAATTACTAAAAGCAAGTTGGACTGAAGCAGTGTTTGGCATGTTCAAGTATCTAGTGAGGAGAGCTTCATTGACAGAGAGTGATGCATTTGCCTTTCTAAAGGCCGATAATGAAGATTGCATTACCTTTTCTGGTTTCTGTGAAGCACTTCGACAGCTCAATTTAATTGGTCATTGCCATGGGTTGAGTGAGGAAGAGATAAAGGACTTGTGGGTCCAAGCAGATATANATGGAAACGGTGTTGTTGATTATAAAGAATTTGTGCAGCAAATCTGGAGTTCAACCGACGACAACAATAGGGAGCAGGAGGATGGTTCAAATGATGTTCAGGAACAAACAATTGGTTTCAGTGTAAAAAATGCAGTTCTGTTTCCTCCTGAGGTGGAGAAAGGTAGATGGCCTGAAGACTACTCCCTTTCTGATCATGCACGGCTTACCGTAGTTTTCTCGCCAATTAGAATGCCATGCTCCCAGATGATTTGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00015	134008	138063	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000015s00000769.1	PF03372.18	Exo_endo_phos	36	262	1.40E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.350
SRR1783600	control	1.393
SRR1783602	moderate drought stress	0.864
SRR1811619	moderate drought stress	0.834

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.836
DRR006520	Root Summer glycyrrhizin high producing strain	2.519
DRR006521	Root Winter glycyrrhizin high producing strain	0.076
DRR006522	Root Winter glycyrrhizin high producing strain	0.074
DRR006523	Root Summer glycyrrhizin low producing strain	0.784
DRR006524	Root Summer glycyrrhizin low producing strain	0.740
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.929
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.981

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.676
SRR2868004	Drought Stress (root)	6.580
SRR2967015	Control (root)	6.408

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.708
SRR9715740	Leaf	1.856
SRR9715741	Leaf	0.729
SRR9715739	Root	0.784
SRR9715742	Root	0.813
SRR9715743	Root	0.247

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.996
SRR8749028	MeJA induced 9h	3.242
SRR8749029	MeJA induced 9h	2.230
SRR8749030	Uninduced	5.561
SRR8749031	Uninduced	20.735
SRR8749032	Uninduced	7.316

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.411
SRR8400027	Control - Root	5.790