Gene detail information of Glyur000015s00000768


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G33140.16.00E-95Ribosomal protein L6 family
NRXP_010034921.13.10E-127PREDICTED: 60S ribosomal protein L9 [Eucalyptus grandis]
COGYP_001013491.12.00E-4850S ribosomal protein L6P [Hyperthermus butylicus DSM 5456]
Swissprottr|P30707|RL9_PEA3.00E-12460S ribosomal protein L9
trEMBLtr|I3SAF6|I3SAF6_LOTJA2.00E-127Uncharacterized protein {ECO:0000313|EMBL:AFK37248.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00015130693132262-


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006412  translation


cellular_component

GO:0005622  intracellular

GO:0005840  ribosome


molecular_function

GO:0003735  structural constituent of ribosome

GO:0019843  rRNA binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000015s00000768.1PF00347.18Ribosomal_L612892.20E-10
Glyur000015s00000768.1PF00347.18Ribosomal_L61011801.10E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control135.022
SRR1783600control135.098
SRR1783602moderate drought stress97.167
SRR1811619moderate drought stress97.521

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain242.084
DRR006520Root Summer glycyrrhizin high producing strain239.768
DRR006521Root Winter glycyrrhizin high producing strain97.899
DRR006522Root Winter glycyrrhizin high producing strain95.446
DRR006523Root Summer glycyrrhizin low producing strain134.956
DRR006524Root Summer glycyrrhizin low producing strain134.808
DRR006525Leaf Summer glycyrrhizin high producing strain79.864
DRR006526Leaf Summer glycyrrhizin high producing strain79.527

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)397.786
SRR2868004Drought Stress (root)254.088
SRR2967015Control (root)211.792

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf120.704
SRR9715740Leaf124.349
SRR9715741Leaf102.477
SRR9715739Root152.475
SRR9715742Root175.936
SRR9715743Root163.893

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h401.802
SRR8749028MeJA induced 9h168.160
SRR8749029MeJA induced 9h182.445
SRR8749030Uninduced31.209
SRR8749031Uninduced7.115
SRR8749032Uninduced19.825

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root244.263
SRR8400027Control - Root215.252

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved