Gene detail

Gene detail information of Glyur000015s00000738

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G56460.1	2.00E-122	GroES-like zinc-binding alcohol dehydrogenase family protein
NR	AFK46230.1	0	unknown [Lotus japonicus]
COG	YP_006370071.1	3.00E-58	oxidoreductase, zinc-binding dehydrogenase family [Tistrella mobilis KA081020-065]
Swissprot	tr\|Q84V25\|ENOXE_FRAAN	1.00E-11	2-methylene-furan-3-one reductase
trEMBL	tr\|I3T138\|I3T138_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK46230.1}

Sequence

Transcript Sequence

>Glyur000015s00000738.1
CGAAAGTTTAGACGGTTTTTTATTTATATATATATAAATCCGGGTGGAAGTGGGAATCACAAATGTATACGTGAAAGTGAAACCAATCGATCGATTAGTGTAAAAGGAAAAGGGGAAAGAGAAGAAATGGAAGCGCTGTTGTGCAGAAAACTGGGCGATCCAACGGTGGGAGTTGAAGATGAAAACAGCCCAATATTCGTGTCGAAGAATCACCCAATCCCTCAATTGGACTCTCCCACTGCGGTGAGAGTGAGGATTAAAGCCACAAGCTTGAATTTCGCAAACTACTTGCAGATTCTGGGCAAGTACCAGGAGAAACCCCCTCTCCCATTCATACCCGGATCCGATTTTTCTGGCTTCGTAGACGCCGTTGGCCCCAAAGTTTCCAACTTGCGAGTCGGAGACCCCGTTTGTTCCTTCGCCGCTCTTGGGTCTTTCGCTCAGTACATCGTCGTTGATGAGACCCAATTGTTTCGCGTGCCGGAAGGTTGTGATCTGGTTGCTGCTGGAGCACTTGCTGTGGCATTTGGCACTTCTCACGTGGCACTCGTGCAGCTATTGAAATCGCTTGGCGTTGATCATGTGGTGGACTTGAGTAATGAAAGTGTTACTCAGAGTGTGAAAGAGTTCCTTANGGCCAGAAGGCTTAAAGGGATTGATGTCCTGTATGACCCAGTTGGAGGCAAGCTTACTAAAGAATCTTTGNGGCTTCTGAAATGGGGTGCTAACATTCTGATAATTGGGTTTGCAAGTGGAGAAATTCCTGTCATCCCTGCTAACATAGCTCTTGTCAAGAATTGGACAGTACATGGCCTTTATTGGGGTAGCTATAAAATACACCGCCCAGGTGTTCTTGAAGATTCTCTCAAGGAGCTACTGTCTTGGTTGGCAAGAGGCTTGATTTCCATTCACATTTCTCATTCTTATCCCCTGTCAGAGGCCAACCTTGCTTTTTCTGCCATCAAAGATAGGAAAGCTATAGGGAAGGTGATGATTGTTTTTGATGAGAAAACTACAAGATCTAAGCTAAAACTGGGTGATCCAACGGTGGGAGTTGAAGATGAAAACAGCCCAATATTCGTATCGAAGAATCACCCAATCCCTCAATTGGAATCTCCNACTGCGGTGAGAGTGAGGATCAAAGCAACAAGCTTGAATTTCGCAAACTACTTGCAGATTCTAGGCAAGTACCAGGAGAAACCCCCTCTCCCATTCATNCCCGGCTCTGATTTTTCTGGCTTCGTAGATGCCGTTGGTCCCAAAGTTTCCAACTTGCGAGTCGGAGACCCTGTTTGTACCTACACCACTCTTGGGTCTTTTGCTCAGTACATCGTCCTTGATGAGACCCAATTGTTTCGCGTGCCGGNAGCAGGAGGTGTGGGCCATGCAGCTGTACAGATTGGAAAAGCATGCGGTGCCGTTGTCATTGCTGTTGCTAGGGGAGCTGAGAAGGCGCAGCTCTTGAAATCTCTTGGTGTTGATCATGTGGTGGACTTGAGTAATGAAAGTGTTACTCAGAGTGTCAAAGAGTTCCTTAAGGCCAGAATGCTTAAAGGGATTGATGTCCTGTATGACCCGGTTGGAGGCAAAATTACTAAAGAATCCTTGCGGCTTCTGAAATGGGGAGCTAACATTCTGATAATTGGATTTGCAAGTGGAGAAATTCCTGTCATCCCTGCTAACATAGCTCTTGTCAAGAATTGGACGGTACATGGCCTTTATTGGAGTAGCTATAAAATACACCTCCCAGGTGTTCTTGAAGATTCTTTCAAGGAGCTACTGTCTTGGTTGGCAAGAGGCTTGATTTCCATTCACATTTCTCANTCTTATCCCCTGTCAGAGGCCAACCTTGCTTTTTCTGCCATCAAAGATAGGAAAGCTATAGGGAAGGTGATGATTGTTTTTGATGAGAAAACTACAAGATCTAAGCTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00015	2358	10084	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0008270 zinc ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000015s00000738.1	PF08240.7	ADH_N	38	97	1.30E-09
Glyur000015s00000738.1	PF00107.21	ADH_zinc_N	127	237	6.60E-13
Glyur000015s00000738.1	PF08240.7	ADH_N	332	394	2.20E-09
Glyur000015s00000738.1	PF00107.21	ADH_zinc_N	417	541	1.00E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.586
SRR1783600	control	18.114
SRR1783602	moderate drought stress	11.023
SRR1811619	moderate drought stress	10.931

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.971
DRR006520	Root Summer glycyrrhizin high producing strain	12.005
DRR006521	Root Winter glycyrrhizin high producing strain	6.487
DRR006522	Root Winter glycyrrhizin high producing strain	6.111
DRR006523	Root Summer glycyrrhizin low producing strain	6.278
DRR006524	Root Summer glycyrrhizin low producing strain	5.947
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.259
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.039

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	37.070
SRR2868004	Drought Stress (root)	39.026
SRR2967015	Control (root)	32.755

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	61.029
SRR9715740	Leaf	56.234
SRR9715741	Leaf	48.739
SRR9715739	Root	17.016
SRR9715742	Root	15.836
SRR9715743	Root	17.660

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.930
SRR8749028	MeJA induced 9h	15.383
SRR8749029	MeJA induced 9h	7.891
SRR8749030	Uninduced	8.439
SRR8749031	Uninduced	5.576
SRR8749032	Uninduced	4.189

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.843
SRR8400027	Control - Root	33.923