Gene detail

Gene detail information of Glyur000014s00002580.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G25140.1	0	Nucleotide-diphospho-sugar transferases superfamily protein
NR	XP_003552108.1	0	PREDICTED: galacturonosyltransferase 8-like [Glycine max]
COG	YP_003549730.1	5.00E-07	glycosyl transferase family protein [Coraliomargarita akajimensis DSM 45221]
Swissprot	tr\|Q9LSG3\|GAUT8_ARATH	0	Galacturonosyltransferase 8
trEMBL	tr\|I1N201\|I1N201_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G33210.1}

Sequence

Transcript Sequence

>Glyur000014s00002580.1
TAAAATCGCAGCTATAAAATTTCCTCTCTCTGTGCTTTCCTTTCACTTTTGGAGAGAACACACTGTGAGAAAGAAGAGAAGAAGAAGAGAAGAAAAAGAAACCGTGTGGCATGGTTTTGAGATTTGNGAGTGAATGAATGAGTGTTGCTTCTTCTGAATCAACAATCACTCTCTCTCTTTGATTCTGATCCACCAAAATGGTGAATCCACGTTTTCCACGCTCCAGGATCCGAACCTTCAGCTTCTCCTTCACACTCTTCGCTTCTGCAATTTCCATCTCTCTCTGCATTCTCTTCACNCTCTCTTTCCTCTTCACCACCCATTCTTATTCCTCCAACCAACAACACCACTTGGGTTCTGATGGTGGTGTTGCACACGGATTTGAATCAATAAGGAGATCGGTTCTCGCTCTGAAATCAGATCCCCTCAAGCCTCGGTTGGACCAGATCCGAAAGCAAGCTGAGGATCANCGATCTCTTGCTCTTGTGTATGCTTCTTATGCACGAAAGCTCAAGCTTGAGAGCTCAAAGCTTGTTAGGATTTTCGCGGAACTATCACGGACCTTCTCCGATTTGATGAACAAACCTCAGTACAGGACTCTTTTCAGCAACGATGCAGTCCCCGTTGATGAATCGGTGGTTCGCCAATTGGAGAAGGAAGTGAAGGAGCGCATTAAAACCACGCGNCAGGTGATCGGCGAAGCCAAGGAGTCCTTTGATAACCAGCTCAAGATTCAAAAGTTGAAGGACACGATTTTTGCCGTCAATGAGCAGTTAACAAAGGCGAAGAAGCAGGGAGCTTTCTCGAGCTTAATTGCCGCNAAGTCCATTCCGAAGAGCTTGCATTGTCTCTCAATGAGGTTAATGGAAGAGCGGATTGCTCATCCGGATAAGTACTCGGATGAGGGGAAGACTACTCCTCCTGAAGTTGAAGATCCCAACCTGTATCACTATGCCTTGTTCTCGGACAATGTTGTCGCAGCATCTGTTGTGGTCAATTCAGCAACAAAGAATGCAAAGGAACCGTGGAAGCACGTGTTTCACGTTGTGACCGACAAGATGAATCTNGGAGCAATGCAAGTGATGTTTAAGTTGAAGGATTATAATGGTGCACACGTTGAGGTTAAGGCAGTTGAGGATTACAAATTCCTGAATTCTTCCTATGTGCCGGTCCTTCGACAACTAGAATCTGCCAACCTGCAGAGATTCTACTTTGAGAACAAGCTTGAGAACGCTACGAAGGACACGACAAATATGAAGTTCAGGAATCCCAAATACTTGTCGATATTGAACCATTTGAGATTCTACTTGCCAGAGATGTATCCAAAGTTGCATAAAATTCTGTTTTTGGATGATGACATAGTGGTTCAGAAGGACCTTACTGGGTTATGGAACATTGATATGGATGGCAAGGTGAATGGAGCTGTAGAAACATGTTTCGGGTCATTCCATAGATATGCACAGTACATGAATTTCTCGCATCCCTTGATTAAAGCAAAATTTAATCCAAAGGCTTGTGCATGGGCTTATGGAATGAATTTCTTTGATTTGGATGCGTGGAGAAGGGAAAAATGCACAGAAGAGTATCATTACTGGCAGAATCTGAATGAGAACAGGACATTGTGGAAATTAGGGACATTGCCACCTGGTCTAATCACATATTACTCCACAACAAAGCCACTGGACAAGTCATGGCATGTTCTGGGACTTGGGTATAACCCAAGCATAAGCATGGATGAGATCAAGAGTGCAGCAGTGGTGCACTTCAATGGTAACATGAAGCCATGGCTTGACATTGCAATGACCCAATTCAAGCCACTTTGGACAAAGTATGTTGACTANGAGTTAGAGTTCGTTCAGGCCTGCAATTTTGGTATCTAAATAAATGGTTTAATTGGGTATTATCTTCGAATCTCACTTGGTGATGCTGTGTCATGTGCCAAAAGCAGTAATTTGCTAGTTNTTATTTTTGATATATACGTTTTATTAATAGAGGGTCCTCCTAGCTGGTGCAAGAAAAATCTTGCTTCTTTCTAATTGTAAAATACTTNAGTATAGTAGTTAATTAATTCGAACATGTCTTCCTCTTATTTATTATTCATAACGTTTACGCAATAATGTTTTTGTTAAAGATGTCGTTGATCCTGAACAATGTTNCTTAATTAAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00014	568874	572257	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13648	GAUT	EC:2.4.1.43	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

molecular_function

GO:0016757 transferase activity, transferring glycosyl groups

GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000014s00002580.1	PF01501.15	Glyco_transf_8	257	533	2.40E-71

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	79.965
SRR1783600	control	80.472
SRR1783602	moderate drought stress	66.323
SRR1811619	moderate drought stress	66.369

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	54.580
DRR006520	Root Summer glycyrrhizin high producing strain	54.021
DRR006521	Root Winter glycyrrhizin high producing strain	240.537
DRR006522	Root Winter glycyrrhizin high producing strain	234.194
DRR006523	Root Summer glycyrrhizin low producing strain	75.428
DRR006524	Root Summer glycyrrhizin low producing strain	75.650
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.357
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.364

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	69.279
SRR2868004	Drought Stress (root)	57.791
SRR2967015	Control (root)	59.028

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	71.142
SRR9715740	Leaf	42.986
SRR9715741	Leaf	55.848
SRR9715739	Root	60.017
SRR9715742	Root	88.653
SRR9715743	Root	83.527

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	99.937
SRR8749028	MeJA induced 9h	61.711
SRR8749029	MeJA induced 9h	41.447
SRR8749030	Uninduced	18.236
SRR8749031	Uninduced	9.573
SRR8749032	Uninduced	10.084

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	65.545
SRR8400027	Control - Root	89.627