Gene detail

Gene detail information of Glyur000014s00002572

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G45890.1	3.00E-103	senescence-associated gene 12
NR	XP_003557016.1	0	PREDICTED: vignain-like [Glycine max]
COG	YP_006415684.1	2.00E-33	cysteine protease [Thiocystis violascens DSM 198]
Swissprot	tr\|A2XQE8\|SAG39_ORYSI	3.00E-150	Senescence-specific cysteine protease SAG39 {ECO:0000305} (Precursor)
trEMBL	tr\|K7K0Y1\|K7K0Y1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA0101S00260.2}

Sequence

Transcript Sequence

>Glyur000014s00002572.1
ATGGACACTAAAAACCAGTTGCGTCAAATTTCCTTGGCNTTGCTTCTCTGTTTGGGATTGTGGGCTTTTGAAGTCACATCTCGCACTCTCCAAGATGCCTCCATGTATGAGAGGCATGAGCAATGGATGGCTCGCTATGGCAGATCCTATAAGGATCCACAGGAAAGGGAGAAGCGTTTTATGATATTCAANGAAAATGTGAATTACATTGAAGCCTCCAACAATGCTGGCNATAAACCATACAAGCTAGGCATTAATCGATTTGCAGACCTCACCAATGAGGAGTTCACATCATCCAGAAACAGATTCAAGGGGCATATGTGCTCCTCAATCACAAGAACAACTACTTTTAAGTACGAAAATGTGACCGCAGTGCCATCCACAGTGGATTGGAGGCAGAAAGGAGCAGTGACACCTGTGAAGGACCAAGGCCAATGTGGATGTTGCTGGGCTTTCTCGGCTGTTGCAGCAACTGAAGGAATTCATCAGCTGAGTACTGGAAAGTTGGTCTCTTTATCAGAACAAGAACTTGTTGACTGTGACACAAAAGGTGTGGACCAAGGTTGTGAGGGTGGTCTTATGGACGATGCTTTCAAATTCATCATCCAGAATCATGGACTCAGCACTGAAGCCAAATACCCCTATCAGGGTGTTGACGGAAAATGCAATGCAAATGCAGCAACCACCACAGCTGCTACCATTACAGGGTACGAGGATGTCCCTGCAAACAATGAGCAGGCACTGCAAAAAGCTGTGGCCAGTCAACCAATTTCTGTAGCCATTGATGCTAGTGGCTCTGACTTTCAGTTCTACAAAAGTGGTGTCTTCACCGGTTCGTGTGGAACCGAATTGGATCACGGTGTCACTGCTGTGGGNTATGGTGTTAGTAATGATGGGACTAAGTACTGGCTGGTTAAGAACTCGTGGGGGACTGAGTGGGGTGAAGAAGGGTACATTAGGATGCAAAGGGGTGTGGCTGCTGCTGAAGGACTNTGTGGCATTGCAATGCAAGCTTCTTACCCTACTGCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00014	513259	514384	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0008234 cysteine-type peptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000014s00002572.1	PF08246.7	Inhibitor_I29	40	96	1.20E-18
Glyur000014s00002572.1	PF00112.18	Peptidase_C1	125	342	3.60E-85

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.056
SRR1783600	control	1.019
SRR1783602	moderate drought stress	0.426
SRR1811619	moderate drought stress	0.497

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.905
DRR006520	Root Summer glycyrrhizin high producing strain	1.525
DRR006521	Root Winter glycyrrhizin high producing strain	1.785
DRR006522	Root Winter glycyrrhizin high producing strain	1.869
DRR006523	Root Summer glycyrrhizin low producing strain	0.812
DRR006524	Root Summer glycyrrhizin low producing strain	0.750
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.864
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.652

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.337
SRR2868004	Drought Stress (root)	0.467
SRR2967015	Control (root)	0.722

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.010
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.292
SRR9715742	Root	0.343
SRR9715743	Root	0.185

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.236
SRR8749028	MeJA induced 9h	1.452
SRR8749029	MeJA induced 9h	0.692
SRR8749030	Uninduced	1.267
SRR8749031	Uninduced	0.148
SRR8749032	Uninduced	0.110

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.038
SRR8400027	Control - Root	0.084