Gene detail information of Glyur000014s00002566 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42570.1 | 2.00E-136 | TRICHOME BIREFRINGENCE-LIKE 39 |
| NR | XP_004505509.1 | 0 | PREDICTED: uncharacterized protein LOC101514285 [Cicer arietinum] |
| Swissprot | tr|Q9SIN2|TBL39_ARATH | 8.00E-170 | Protein trichome birefringence-like 39 |
| trEMBL | tr|G7JV22|G7JV22_MEDTR | 0 | Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein {ECO:0000313|EMBL:AES89762.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00014 | 487879 | 491492 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000014s00002566.1 | PF14416.1 | PMR5N | 47 | 98 | 3.00E-22 |
| Glyur000014s00002566.1 | PF13839.1 | PC-Esterase | 100 | 376 | 1.70E-65 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.622 |
| SRR1783600 | control | 1.691 |
| SRR1783602 | moderate drought stress | 1.698 |
| SRR1811619 | moderate drought stress | 1.744 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.383 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.429 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.456 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.445 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.072 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.165 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 56.392 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 55.668 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 26.169 |
| SRR2868004 | Drought Stress (root) | 22.626 |
| SRR2967015 | Control (root) | 20.894 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 193.795 |
| SRR9715740 | Leaf | 115.517 |
| SRR9715741 | Leaf | 136.202 |
| SRR9715739 | Root | 9.855 |
| SRR9715742 | Root | 1.568 |
| SRR9715743 | Root | 3.217 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 76.705 |
| SRR8749028 | MeJA induced 9h | 117.989 |
| SRR8749029 | MeJA induced 9h | 432.622 |
| SRR8749030 | Uninduced | 26.707 |
| SRR8749031 | Uninduced | 130.163 |
| SRR8749032 | Uninduced | 180.432 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.658 |
| SRR8400027 | Control - Root | 8.090 |