Gene detail information of Glyur000014s00002557.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G58100.1 | 3.00E-29 | plasmodesmata callose-binding protein 5 |
| NR | XP_004505519.1 | 1.47E-88 | PREDICTED: glucan endo-1,3-beta-glucosidase-like protein 1-like [Cicer arietinum] |
| Swissprot | tr|Q9M2K6|PDCB5_ARATH | 8.00E-49 | PLASMODESMATA CALLOSE-BINDING PROTEIN 5 (Precursor) |
| trEMBL | tr|G7JV10|G7JV10_MEDTR | 2.00E-85 | Carbohydrate-binding X8 domain protein {ECO:0000313|EMBL:AES89750.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00014 | 438785 | 440148 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM43 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000014s00002557.1 | PF07983.8 | X8 | 39 | 110 | 9.50E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.801 |
| SRR1783600 | control | 7.802 |
| SRR1783602 | moderate drought stress | 5.075 |
| SRR1811619 | moderate drought stress | 4.658 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.793 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.191 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.917 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.652 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.205 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.539 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.828 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.553 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.449 |
| SRR2868004 | Drought Stress (root) | 6.614 |
| SRR2967015 | Control (root) | 6.890 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.109 |
| SRR9715740 | Leaf | 1.182 |
| SRR9715741 | Leaf | 2.222 |
| SRR9715739 | Root | 9.620 |
| SRR9715742 | Root | 6.878 |
| SRR9715743 | Root | 6.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.100 |
| SRR8749028 | MeJA induced 9h | 13.376 |
| SRR8749029 | MeJA induced 9h | 11.345 |
| SRR8749030 | Uninduced | 2.145 |
| SRR8749031 | Uninduced | 0.750 |
| SRR8749032 | Uninduced | 1.813 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.655 |
| SRR8400027 | Control - Root | 17.511 |