Gene detail information of Glyur000014s00002547 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60860.1 | 1.00E-119 | RAB GTPase homolog A1F |
| NR | XP_003607539.1 | 7.48E-155 | GTP-binding protein ras-like protein [Medicago truncatula] |
| COG | YP_008431664.1 | 3.00E-26 | hypothetical protein N186_01315 [Thermofilum sp. 1910b] |
| Swissprot | tr|Q9FJH0|RAA1F_ARATH | 5.00E-152 | Ras-related protein RABA1f |
| trEMBL | tr|G7JUZ6|G7JUZ6_MEDTR | 3.00E-155 | RAB GTPase-like protein C2B {ECO:0000313|EMBL:AES89736.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00014 | 391685 | 393450 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000014s00002547.1 | PF00071.17 | Ras | 15 | 175 | 4.90E-61 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.800 |
| SRR1783600 | control | 11.932 |
| SRR1783602 | moderate drought stress | 5.145 |
| SRR1811619 | moderate drought stress | 4.716 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.011 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.870 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.448 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.789 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.988 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.662 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.717 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.790 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.322 |
| SRR2868004 | Drought Stress (root) | 13.207 |
| SRR2967015 | Control (root) | 11.651 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.105 |
| SRR9715740 | Leaf | 3.568 |
| SRR9715741 | Leaf | 3.436 |
| SRR9715739 | Root | 4.558 |
| SRR9715742 | Root | 4.664 |
| SRR9715743 | Root | 4.433 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.009 |
| SRR8749028 | MeJA induced 9h | 17.050 |
| SRR8749029 | MeJA induced 9h | 11.518 |
| SRR8749030 | Uninduced | 15.757 |
| SRR8749031 | Uninduced | 16.686 |
| SRR8749032 | Uninduced | 13.951 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.032 |
| SRR8400027 | Control - Root | 9.611 |