Gene detail information of Glyur000014s00002547


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G60860.11.00E-119RAB GTPase homolog A1F
NRXP_003607539.17.48E-155GTP-binding protein ras-like protein [Medicago truncatula]
COGYP_008431664.13.00E-26hypothetical protein N186_01315 [Thermofilum sp. 1910b]
Swissprottr|Q9FJH0|RAA1F_ARATH5.00E-152Ras-related protein RABA1f
trEMBLtr|G7JUZ6|G7JUZ6_MEDTR3.00E-155RAB GTPase-like protein C2B {ECO:0000313|EMBL:AES89736.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00014391685393450-


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006886  intracellular protein transport

GO:0006913  nucleocytoplasmic transport

GO:0007165  signal transduction

GO:0007264  small GTPase mediated signal transduction

GO:0015031  protein transport


cellular_component

GO:0005622  intracellular

GO:0016020  membrane


molecular_function

GO:0003924  GTPase activity

GO:0005525  GTP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000014s00002547.1PF00071.17Ras151754.90E-61


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.800
SRR1783600control11.932
SRR1783602moderate drought stress5.145
SRR1811619moderate drought stress4.716

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.011
DRR006520Root Summer glycyrrhizin high producing strain11.870
DRR006521Root Winter glycyrrhizin high producing strain4.448
DRR006522Root Winter glycyrrhizin high producing strain4.789
DRR006523Root Summer glycyrrhizin low producing strain8.988
DRR006524Root Summer glycyrrhizin low producing strain9.662
DRR006525Leaf Summer glycyrrhizin high producing strain4.717
DRR006526Leaf Summer glycyrrhizin high producing strain4.790

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)19.322
SRR2868004Drought Stress (root)13.207
SRR2967015Control (root)11.651

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf4.105
SRR9715740Leaf3.568
SRR9715741Leaf3.436
SRR9715739Root4.558
SRR9715742Root4.664
SRR9715743Root4.433

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h24.009
SRR8749028MeJA induced 9h17.050
SRR8749029MeJA induced 9h11.518
SRR8749030Uninduced15.757
SRR8749031Uninduced16.686
SRR8749032Uninduced13.951

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root10.032
SRR8400027Control - Root9.611