Gene detail

Gene detail information of Glyur000014s00002540

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G35160.1	9.00E-30	O-methyltransferase family protein
NR	XP_003607523.1	0	O-methyltransferase [Medicago truncatula]
COG	YP_003370082.1	2.00E-27	O-methyltransferase family 2 [Pirellula staleyi DSM 6068]
Swissprot	tr\|B6VJS4\|ROMT_VITVI	5.00E-132	Trans-resveratrol di-O-methyltransferase
trEMBL	tr\|G7JUY0\|G7JUY0_MEDTR	0	Orcinol O-methyltransferase {ECO:0000313\|EMBL:AES89720.2}

Sequence

Transcript Sequence

>Glyur000014s00002540.1
ATGGGATCCCACGGTGAAGACCATGCTGCCAAATTGGTTCGAGCTCAAACCCAGGTCTTCAATCACATCTTCAGCTTCATACACTCCATTTCCCTTAAATGTGCAATTGAATTGTGCATACCAGATGTTATACACAAATATGGCCAACCCATTCCACTCTCAGAACTCATTGCTTCTCTACCAATCCACCCCTCCAAAACTGATGGNATTCATCGCTTGATGCGAATTTTGACCCATTCTGGCTTCTTCTCTCAACAGAATAATCACGACATCACTAATGAAAATGAGCTAGAAGTGAGGTATGGGCTCACCGATGCATCTAAGCTACTACTCAAAGACCATCCCTTTGGTATGACATCTTTGTTGCATGTCATACTCTCTCCGGTCTTCACTAAGCCGTGGCACCAACTTTCTACCTGGTTCAAAAATGATGATCTGACACCGTTTCACACGGAAAACAATGGGATTGCATTTTGGGATTATGCTGGCTGTGACCCCGAATTTAGTCACTTGTTCAATGATGCCATGGCAAGCGAAACTCGATTGGCTTCCAGTGTGGTGATGGACAAGTGTAGAGGGGTGTTCGAAGGGTTGGAATCGTTGGTTGATGTTGGGGGAGGCACGGGAACTATGGCTAAGGCCATTGCCAAGTCATTCCCACAACTTGAGTGCGTTGTGTTTGATCTCCCACGTGTTGTTGCNGGCTTGCAAGGTGGTGAGAACCTAAAATATGGTGTATTACATGATTGGAGTGATGAGGAATGTCTGAAGATACTAAAGAAATGCAAGGAGGCGATTGCGGCGGCGGGCAAAGAGAAAGAAGGGAAGGTGATAATCATAGACGCGGTGATGGGGAATATTGATAAGGCTAACGATGAATCAATTGAAGCGCAAATCTTTTATGATTTGGAGATGATGGTGATGGTAGCTGGAAAAGAGAGAAATGAAAAAGAATGGTCCAAACTATTTTTCTCTGCCGGATTCAGAAACTACAAGATAACTCCAGTTCTGGGTTTTAAGTCTCTCATTGAGGTTTATCCATAGTATCACCTGTTGACAAGTAATGGGGGTTTCAACTGGTCACTATTAAAGTAACTCATTGAGGTTTTATCCGTAGTATATATACTACATTTTGACATATCTTCTGTTGGTTTTGTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00014	356464	358080	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0008168 methyltransferase activity

GO:0008171 O-methyltransferase activity

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000014s00002540.1	PF08100.6	Dimerisation	31	78	9.30E-15
Glyur000014s00002540.1	PF00891.13	Methyltransf_2	100	242	2.10E-36
Glyur000014s00002540.1	PF00891.13	Methyltransf_2	246	323	2.90E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.360
SRR1783600	control	8.349
SRR1783602	moderate drought stress	10.026
SRR1811619	moderate drought stress	10.207

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	49.031
DRR006520	Root Summer glycyrrhizin high producing strain	49.055
DRR006521	Root Winter glycyrrhizin high producing strain	0.267
DRR006522	Root Winter glycyrrhizin high producing strain	0.170
DRR006523	Root Summer glycyrrhizin low producing strain	5.563
DRR006524	Root Summer glycyrrhizin low producing strain	5.906
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.373
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.324

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.736
SRR2868004	Drought Stress (root)	33.421
SRR2967015	Control (root)	66.125

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.029
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.280
SRR9715739	Root	14.857
SRR9715742	Root	10.482
SRR9715743	Root	9.863

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.003
SRR8749028	MeJA induced 9h	0.058
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.033
SRR8749032	Uninduced	0.199

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.013
SRR8400027	Control - Root	39.162