Gene detail

Gene detail information of Glyur000014s00002529.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G28500.1	2.00E-95	NAC domain containing protein 73
NR	XP_003526260.1	7.88E-175	PREDICTED: NAC domain-containing protein 8-like [Glycine max]
Swissprot	tr\|Q6NQK2\|NAC8_ARATH	7.00E-66	NAC domain-containing protein 8
trEMBL	tr\|K7KY03\|K7KY03_SOYBN	3.00E-175	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G44250.3}

Sequence

Transcript Sequence

>Glyur000014s00002529.1
AACCAACCCTCTCTCTCTCTCTCTCTCTCTCTCTCATTGTTAATCTAATTCTCTATTTAGATTTTCAAGTACCTCTCTCTTGTTTTCTTTCTCGTTAAGTGCAAGGGGAGGTTGGGAAGGACTGCAATATTATTATTCACTCTCATGCAAAAGAGAGAACCAAAAAAGTGAGGGAGAATTTAATTCCTTCCCACACCTCAACAAGTACTTGCATGAGGGGAGCAAATATCTTTATTACAAGAGACAAGTTTTCCTTTTCTTCCCTTTTTATTAATTATTACTACTTTAAATCCCTCTCTTAACTCAACTACCCTTCTCTGATCTGTCCCTCCCTTCCCCATTTGGTCGATCACTTTTAGTTTCTGTTCCATTTGTTTTATAGCAGCAGAAGAGGAAACAAGGAAAAAGAGTATATCTCCCTAAATGGAATGATTGAGGAAGAGAAGAGAAAAACAAGGAAATGACTCAGTGCAGTGACCCTGAAAACAATCATAACATCATCACAGTGGAGGGAAGAAAAGACAGTTTAATTAGAACTTGTCCCACATGTGGTCATCATATCAAATGCCAAGAGCAGGGTGGTGGAATTCATGACTTACCTGGACTGCCTGCTGGAGTGAAGTTTGATCCAACAGATCAAGAGATTCTTGAACATTTGGAAGCGAAGGTGCGGTCTGATATTCATAAGCTTCACCCTCTAATTGATGAGTTCATCCCTACTCTTGAAGGNGAGAATGGAATCTGCTACACTCATCCGGAGAAGTTGCCAGGAGTTAGCAAAGATGGCCTGATCCGCCATTTCTTTCACAGGCCTTCCAAGGCATATACAACAGGAACAAGGAAAAGGAGGAAGGTTCACTCAGATGAAGATGGTAGTGAGACCCGTTGGCACAAAACAGGTAAAACCAGGCCGGTCTATAACAGTGCCAAGTTGAGAGGGTACAAAAAGATTCTTGTACTCTACACAAACTATGGAAAGCAGAGAAAGCCAGAGAAGACAAATTGGGTGATGCACCAGTACCACCTTGGCAGTGATGAAGAGGAGAAGGAAGGGGAACTTGTGGTCTCCAAAGTTTTCTATCAAACACAACCTAGACAATGTGGTGGTTCACTGATGAAAGAGTCATCAGTTCCTGCAGGAAAACCTGTGAAGGGTACTCAAAGTGGGCATGAGGTAATCATCAATAACAAAAACAGTAATAATAATAGTGGGTTTGTTGAGTACTACCACTCAAATTTCATATCATTTGATCAAGGGAACCAAAACCAACAGTGCTCAAGTAATTTCCCATTTTCCTGTCCATGATGGTGCGATGCTCCTTTCATTCCTTGAATAAAGTGGTGGACAAGAAGAGGAATTGGGTAAGAGACTATATATGAAATATATATTGGAGATGAGAAAATATTACTAATACTGAGGCATTACAATTATATATATTATTATGCAAAAATCAAATAAGTTAATAATGCTACTGTAGTTAGGAGGGAAAAAGATGGGCAAGAATAAGGAGAGAAATTGCTGCCCAGATACTCCTGTTAAGGAAGAAAGAGTTTGGTCAAGTATAAAGAGGAACATTTAGCTGTAACACTCACTGTTCTTTCTTTTTTCCTACCTTTAAAATTTTTTAGTGTAGCTTCTATCATGCTTTGTACAGTAGTCTCAAAGGCATCATGTCCATACTTTTGGGGTTAAGACTAACCAATCAAACTGTACAAACATGACTTTTTAGTTTTTACCTTAAGCAGTCTTGAAATCTACGTACATGTGTGTGCCTTTTTCCCTGAAAATTTTTATTGTATACGAAACTATATTTATTGCCACCACTCCAAAAACTCCTTTAGATAGCATTTTTCCCCACTTAGATAGCATTTAAATTGAAATTTCTAATGGTTGGGGGGATTGTAAGCTATGAGTAATGACTTGTGACCCATAACCCATTTTTCCTCTATTATTGGTATTGCTTAAATCACGATCAGCCACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00014	298356	301100	+

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000014s00002529.1	PF02365.10	NAM	49	189	1.10E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.829
SRR1783600	control	0.827
SRR1783602	moderate drought stress	1.362
SRR1811619	moderate drought stress	1.318

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.845
DRR006520	Root Summer glycyrrhizin high producing strain	2.873
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.838
DRR006524	Root Summer glycyrrhizin low producing strain	2.733
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.703
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.748

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.279
SRR2868004	Drought Stress (root)	4.251
SRR2967015	Control (root)	4.513

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.992
SRR9715740	Leaf	1.003
SRR9715741	Leaf	0.231
SRR9715739	Root	0.400
SRR9715742	Root	1.697
SRR9715743	Root	1.233

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.585
SRR8400027	Control - Root	4.132