Gene detail

Gene detail information of Glyur000014s00002513

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G10330.1	3.00E-102	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004505554.1	0	PREDICTED: putative pentatricopeptide repeat-containing protein At1g10330-like [Cicer arietinum]
Swissprot	tr\|Q9SY75\|PPR30_ARATH	3.00E-128	Putative pentatricopeptide repeat-containing protein At1g10330
trEMBL	tr\|G7JTW8\|G7JTW8_MEDTR	0	PPR containing plant-like protein {ECO:0000313\|EMBL:AES89697.1}

Sequence

Transcript Sequence

>Glyur000014s00002513.1
ATGAAGCAAATCCATTCCCTTGTAATCACCAATGGCTACCTCCTCCATGACCCAAATTCTCCATCTTCAACTTCAACCCATTATTATAATAATAAAAAATGGATGCCAACACTCCTCTACAACGCCCTCATAAGAGCCCATCACTATCACAACCACAACCACAACCACAACAAGAAGGTCCTTCTCCTATTCACCCACATGCTCGCAAACGAAGCCCCACCAAACACTCACACCTTCCCTCCACTCCTCAAATCCNCCCCTCCTTCTCTTGCCACACCCCTTCACTCTCAAGCCCTCAGGCGTGGCCTCTTCTCCGACCCTTTCGTCCTCACCACCCTCCTTGTCCTCTACGCAAGAAACAACCACCTTGACCATGCCCACAAGGTGTTCGAGGAAATTCCCCTCTTTTGCATCGTTGCGTGCAACGCAATGATCAATGCTCTNTCCGTCAATGGCGACATGGAGGGTGCTTGGTCACTCTTTACACGCATGCCCCACCGTGATGTTGTCTCATGGACAACCATGGTGAACGGTTTTTCTCTGAATGGGAACTTCGGTGCTGCGGTTCGGTTTTTTGGGTTGATGATGACTCACGAGGATGTCATGGATCGCTTGGTGAAACCGAATGAGGCTACTTATGTNAGTGTGCTCTCTTCTTGTGCAAATTTAGAAGGGAAAAAAGCGGGTCTTGATTGTGGGAAACAGGTTCATGGATACAGAGTGGTGAGTGGGTGGGTCAAGTTGGGAGGTTTTGTGGGAACTTCATTGATAANTCTTTATGGGAAGATGGGGTGTTTGAACTATGCTGTGAATGTTTTCAGAGCAACGGTTTCCAGATACACCTGCACTTGGAACGCAATGATTTCTTCACTGGCTTCCAATGGTAGAGAGAAGGAGGCTTTGGACTTGTTTGAGGAGATGAGGCTTCGAGGGTTGAGACCAAATAGTATTACCTTCGTGGCAGTTCTTACAGCATGTGCTCGTGGGAAACTTGTTAGGGAAGGGTTGGAGTTGTTTCGATCAATGTCACGTGANTTTCAGGTGGTGCCAGTAATGGAGCACTATGGGTGTGTGGTTGATCTTTTGGGGAGAGCAGGGCTTATCCAGGAAGCTGCTGACATCATAAGGAATATGCCTCTTCAGCCTGATGCATCTGTTTTGGGGGCATTTTTGGGTGCATGCAGGATTCATGGAGCTATTGAACTCGGAGAAGAAATTGGGAAAGAGATGCTTAAGTTGCAGACACAACACTGTGGGCAATACTTGTTGTTGTCAAGCATGAATGCGGAGAGAGAAAGATGGGAACATGCTGCTGATCTAAGGAAAGAAATAAATCAGTTTGTGCAAGAGGCTGACTATATGACTATAGAGAATGCCTTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00014	212891	214773	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000014s00002513.1	PF01535.15	PPR	110	133	0.19
Glyur000014s00002513.1	PF01535.15	PPR	139	167	1.30E-05
Glyur000014s00002513.1	PF01535.15	PPR	170	196	0.00034
Glyur000014s00002513.1	PF13041.1	PPR_2	281	328	1.90E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.983
SRR1783600	control	1.927
SRR1783602	moderate drought stress	1.731
SRR1811619	moderate drought stress	1.717

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.786
DRR006520	Root Summer glycyrrhizin high producing strain	2.887
DRR006521	Root Winter glycyrrhizin high producing strain	1.128
DRR006522	Root Winter glycyrrhizin high producing strain	1.017
DRR006523	Root Summer glycyrrhizin low producing strain	5.213
DRR006524	Root Summer glycyrrhizin low producing strain	4.855
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.083
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.077

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.864
SRR2868004	Drought Stress (root)	1.206
SRR2967015	Control (root)	0.971

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.287
SRR9715740	Leaf	1.666
SRR9715741	Leaf	1.210
SRR9715739	Root	2.181
SRR9715742	Root	1.907
SRR9715743	Root	0.976

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.053
SRR8749028	MeJA induced 9h	1.442
SRR8749029	MeJA induced 9h	1.548
SRR8749030	Uninduced	0.572
SRR8749031	Uninduced	0.151
SRR8749032	Uninduced	0.484

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.134
SRR8400027	Control - Root	1.737