Gene detail information of Glyur000014s00002512 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G20590.1 | 2.00E-77 | Reticulon family protein |
| NR | XP_003526265.1 | 0 | PREDICTED: reticulon-like protein B17-like isoform X1 [Glycine max] |
| Swissprot | tr|Q8LDS3|RTNLR_ARATH | 2.00E-116 | Reticulon-like protein B18 |
| trEMBL | tr|I1KEZ4|I1KEZ4_SOYBN | 0 | Reticulon-like protein {ECO:0000256|RuleBase:RU210713} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00014 | 210186 | 212979 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000014s00002512.1 | PF02453.12 | Reticulon | 197 | 353 | 2.60E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.120 |
| SRR1783600 | control | 3.260 |
| SRR1783602 | moderate drought stress | 2.073 |
| SRR1811619 | moderate drought stress | 2.046 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.894 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.616 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.752 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.775 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.593 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.549 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.682 |
| SRR2868004 | Drought Stress (root) | 5.657 |
| SRR2967015 | Control (root) | 9.731 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.815 |
| SRR9715740 | Leaf | 1.162 |
| SRR9715741 | Leaf | 1.585 |
| SRR9715739 | Root | 3.219 |
| SRR9715742 | Root | 2.363 |
| SRR9715743 | Root | 1.689 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.513 |
| SRR8749028 | MeJA induced 9h | 6.641 |
| SRR8749029 | MeJA induced 9h | 5.759 |
| SRR8749030 | Uninduced | 0.244 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.274 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.291 |
| SRR8400027 | Control - Root | 13.584 |