Gene detail

Gene detail information of Glyur000014s00002509

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G03780.2	3.00E-174	targeting protein for XKLP2
NR	XP_004505557.1	0	PREDICTED: protein TPX2-like [Cicer arietinum]
Swissprot	tr\|F4I2H7\|TPX2_ARATH	0	Protein TPX2
trEMBL	tr\|I1LS60\|I1LS60_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G13280.1}

Sequence

Transcript Sequence

>Glyur000014s00002509.1
GAACTAACCGTTACACTTTGACGAGATTACACAAACAACACACACTCCCTCCTCCTGCTGTCTCTCTTTCTTACAACTTCAACAATNATTAGTAGTGAACACAACACGCTCTCGCGCTCGCGCTCTCCATCCCTCACTCACTTATTAATCAATTGGATCAACCAAATCTAATTCACTGAAACCCTAATCGGAACTGAAGAAAATGGCGGTGGCGGAAGGAACCGGCGGTGGCACCTTAATCGACGAGACATACGAATTTTCGGCGCCGCGATTCTTCGATTTCACCAAAGGGGAGTCCGAGGAGGACATCCNCAGGGCCGAGCTCTGGTTTCAATCCGCTCTCTCCTACGCCCCTTCTCCATTCATGCCTAAAATCAAGGCTGGTAGATCTATTACTGTAGATAGCTTATGTGATTTTAGTGAAGCTGACAAAATGCCCAAGACGTCAGCAAATGTTGATGACAGTGTTCTGGAAACAAATACACACCCACAGTGCATGACTAGCAAAATAAAGGAGGACGATGCACCTTGCACTGAAGCCAAGGAAGGAAATAGTGCAACTGCTTCTGACGTGGTAGTTAGTGGTGTAATTTTTTTGTTTACTTTAAAAAGTTGTTTCCCGGTTTCGGCTTGTAAGGAAGAAAATGCACCTTGCTGCGAAGCCAAAGAAGAAAACAATTCAACCACTTCTCGCGAGGTTTCGGCTTGTAAGGAAGAAAATGCACCTTGCTGCGAAGCCAAAGAAGAAAACAATTCAACCACTTCTCGCGAGGACTCTGTTGACAAGGAAAGAAGTGATAATAAAGGGGATAGCTTAAGGGTATCATCATCCGTAGGAGCATCTGTTGAAGTAGGAAAAGAAGATGCTTGCACACCAAATCCAGCATTGCAGAAAAAAGCCACCACCACCACATCCACGAATTCCAAGAAGCAACAGAACGCTAAAAAGGTAGCCACGAATACCAAAACTCGGTTACAGTCAGCAGCCATGAAAAGCACTGCTGGGACTCCCCACTTGGCCCGAGAGAATCAAGCTATTAAGAGGCAAAAATTGGAAGGAGGAAAAACTAGACAGATTCTGAATGTCAAACCTCAAANGTTGCCTCATAATAAGTCAAAACTGGGTTTAACCACTGGCAATGCCAACGCCTCTTCAAGTACTAGTAAAACTCACAAAGAGGACAGAAAGGTTTATGTTCGTGAAACATCAACACCAGCATCTGTACCATTTATATCAATGGCAGAAATGATGAAAAGATTCCAGTGTAGTACCAGAGACTTGCCATTGCACAGCGCTCTTTCTCATACAAAACCAAAACTCACATTGACCAGGCCTAAGGAACCTGAATTTGAGACAAATCAGCGGGTTCGCCCAGCTAGGGTGAAGAGTACTGCCGAGCTTGAGGAAGAAATGATGGCTAAAATGCCAAAATTCAAGGCTCGACCACTCAATAAGAAGATTTTGCAGACTCCAACTTTACCTCCCATGCAAAGAAGTACACCACAACCACCTGAATTTAAGGAATTTCATCTGGAAACCTTGACTAGGGCTCATCAAAATGCAGATTCGGCTTCAATAGCTTCAACAGAGGTGTCTCATAAGGAGAATCCATGGAAGCCTCATCTTACAGAACCTAAAACTCCAGTACTCCAAACATCACTAAGGGCCCGTCCTCCAAAGGTGAAAAGCTCCGTAGAATTAGAGCAAGAGGAACTTGAAAAGATCCCTAAATTCAAGGCAAGACCTTTAAATAAGAAGATCTTTGAAAGTAAAGGGGATATTGGAATGTTCTGCCATACCAAAAAACATGTTACTGAACCGCAAGAATTTCACTTTGCAACGAATGAGAGGATTCCACCACCTGCTGCCGTGGCTGGTTTATTTGCCAAGCTTTCTTTGAAGTCTGNATCTGCACGTAATCACAGCCCAGTTCCAAGAAACACAACTCCAAATCCATTTCATCTCCACACAGAGGAAAGAGGTGCTGAGAAAGAGAAGAGACTGTTCATGGAACTTCTGCAGAAACAGTTGGAAGAGGAAGCCGCAAGGGTTCCCAAGGCTAATCCATACCCTTATACCACTGACTACCCTGTGATCCCACCAAAACCTGAACCCAAGCATTGTACAAAACCAGAGCCATTCCAATTGGAGAGTCTTGTTAGACATGAGGAAGAAATGCAAAGGGAACAGGAAGAAAGACTTAGAATGGAAAGAGAAGAGGCCCAGATGAGAGAGTTTAAGGCACAACCAATCTTAAAAGAGGACCCAATCCCAGTTCCAGAGAAGGTCCGCAAACCCCTTACACAAGTTCAGGAGTTTAGTTTACGTTTGAATCATCGGGCCATCGATAGAGCACAATTTGATGAGAGGATTAAGGAGAAAGAAATGATGTATAAACGATACAGAGAGGAGAGTGAAGCAGAAAGAATGATAGAGGAAGAGAAGGCACTGAAACAGTTGAGAAGGACAATGGTTCCTCATGCTAAACCAGTTCCAAATTTTGATAATCCGTTTTGTCCCCAAAAGTCTGCTAAGGACACAACAAAACCCAAGTCACCAAATTTGCGTGTACTCCAAAGAAAGGGGAGACGGAAGATATTCANTGGAACTGTAGCCTCGAGTCCTGCTTCTAACATGAGATGACTGATGTATACCACCTCGTGGGTCAGTGTTTGGTGTTCAAGAACTCTTGAATCCTTGGCACCTCCTTCCCTAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00014	180481	185799	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007067 mitotic nuclear division

cellular_component

GO:0005819 spindle

GO:0005874 microtubule

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000014s00002509.1	PF12214.3	TPX2_importin	372	473	2.70E-32
Glyur000014s00002509.1	PF12214.3	TPX2_importin	474	551	2.80E-23
Glyur000014s00002509.1	PF06886.6	TPX2	708	764	1.30E-18
Glyur000014s00002509.2	PF12214.3	TPX2_importin	347	448	2.60E-32
Glyur000014s00002509.2	PF12214.3	TPX2_importin	449	526	2.60E-23
Glyur000014s00002509.2	PF06886.6	TPX2	683	739	1.30E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.939
SRR1783600	control	5.860
SRR1783602	moderate drought stress	4.015
SRR1811619	moderate drought stress	3.938

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.789
DRR006520	Root Summer glycyrrhizin high producing strain	6.597
DRR006521	Root Winter glycyrrhizin high producing strain	1.199
DRR006522	Root Winter glycyrrhizin high producing strain	1.241
DRR006523	Root Summer glycyrrhizin low producing strain	2.579
DRR006524	Root Summer glycyrrhizin low producing strain	2.578
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.757
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.644

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.117
SRR2868004	Drought Stress (root)	8.502
SRR2967015	Control (root)	10.724

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.671
SRR9715740	Leaf	0.537
SRR9715741	Leaf	0.961
SRR9715739	Root	0.648
SRR9715742	Root	3.142
SRR9715743	Root	2.990

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.013
SRR8749028	MeJA induced 9h	16.922
SRR8749029	MeJA induced 9h	12.598
SRR8749030	Uninduced	0.478
SRR8749031	Uninduced	0.196
SRR8749032	Uninduced	0.490

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.943
SRR8400027	Control - Root	9.300