Gene detail

Gene detail information of Glyur000014s00002504

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G28380.1	2.00E-113	Leucine-rich repeat (LRR) family protein
NR	XP_004505561.1	0	PREDICTED: leucine-rich repeat extensin-like protein 3-like [Cicer arietinum]
COG	YP_001192956.1	4.00E-26	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|Q9XIL9\|PLRX3_ARATH	4.00E-127	Pollen-specific leucine-rich repeat extensin-like protein 3 (Precursor)
trEMBL	tr\|A0A072ULP2\|A0A072ULP2_MEDTR	0	LRR/extensin {ECO:0000313\|EMBL:KEH30699.1}

Sequence

Transcript Sequence

>Glyur000014s00002504.1
ATGGCTTCTACCACTTGTGTGTTATCCCTCTTTTTCCTCCTTCTGTCTTGTTTCTTGAACAACCTCAATGCAAAGCACAACATTGCCAACAGTCACAAGCATCATCATCAACACAGGCACAAGAACCCACCATTAAACCCAAGGCTATACCGTGCCTTTCTTGTGCTCCAAGCATGGAAGCATGTGATCTACTCAGACCCAAAAAACTTCACTTCCAATTGGGTAGGCCCTTCAGTTTGCAACTACACCGGCATCTACTGTGCCCCATCTCTTGATGACCCTAAAGTCACAGTTGTTGCTGGCATTGACCTTAACTTTGGAGACATAGCTGGTTTCTTACCCAATGAATTAGGCCTCCTCTCTGACCTCTCACTTCTCCACCTCAACAGNAACCGTTTCTGTGGCATCATTCCAATGACACTAAGAAACCTCACTCTACTCCATGAGCTTGATCTTAGCAACAACAGATTCGTTGGACCTTTCCCTTTGGTTGTTCTTTCCCTTCCTTCGCTTGCCTTTCTCGACCTTCGCTACAATGAATTTGAAGGGCCATTGCCTCCTCAGCTTTTCAACAGATCCTTTGATGCNGTGTTCCTTAACAACAACCGCTTCACAAGTTCTATTCCACCAAACTTAGGCCAAGGCTTTTCAGCTTCTGTCTTGGTCTTTGCCAATAACAGATTTGGGGGGTGTCTTCCAGAGAGCATAGTGAACTTTGCTGATACTTTGGAAGAACTAGTGTTGATCAACACCNGCATTTCGGGTTGTCTTCCACAACAGGTTGGGTTTCTCTACAAGTTGAGGGTGTTGGATGTTAGTTTCAACAACATTGTTGGCCCCATACCTTATAGCCTTNCAGGGTTGTCTCATTTGGAGCAGCTGAATTTGGGACACAACATGATGAGTGGCATAGTCCCTATGGGGGTTTGTGACTTGCCAAACTTGGCAAATTTCACTTTTTCTTATAACTTCTTCTGTGAGGAAGAGGGTATTTGTCAGAATTTGACATCAAAGAGAATAGTGTTTGATGATCGACGCAATTGTTTGCCAGAGAAGCCACTGCAGAGGAGTGAAAAGGAATGTAGTGACAAACTTGAACACCCAGTTGATTGCTTTGAGCTTTGTTGTCCTGTAGGTGGTTCTGGGAACAATGTCACAACTGGTTCTGGTTCAGTGGCTATTCCACCTGCAGCAATGCCTGTTTATGCACCTCTTGTTGCACCAAGCTACCCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00014	155665	156900	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000014s00002504.1	PF13855.1	LRR_8	266	323	2.60E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.259
SRR1783600	control	0.172
SRR1783602	moderate drought stress	0.031
SRR1811619	moderate drought stress	0.031

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.721
DRR006520	Root Summer glycyrrhizin high producing strain	6.534
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	6.095
DRR006524	Root Summer glycyrrhizin low producing strain	6.092
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.453
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.315

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.815
SRR2868004	Drought Stress (root)	2.772
SRR2967015	Control (root)	1.081

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.246
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.132
SRR9715739	Root	0.152
SRR9715742	Root	1.600
SRR9715743	Root	1.192

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.091
SRR8749028	MeJA induced 9h	0.109
SRR8749029	MeJA induced 9h	0.070
SRR8749030	Uninduced	0.204
SRR8749031	Uninduced	0.124
SRR8749032	Uninduced	0.207

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.162
SRR8400027	Control - Root	0.304