Gene detail information of Glyur000014s00002500 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G03760.1 | 9.00E-51 | Prefoldin chaperone subunit family protein |
| NR | XP_003540925.1 | 1.55E-157 | PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X1 [Glycine max] |
| trEMBL | tr|I1LS52|I1LS52_SOYBN | 6.00E-158 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G13190.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00014 | 139425 | 145657 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000014s00002500.1 | PF02996.12 | Prefoldin | 40 | 155 | 1.20E-22 |
| Glyur000014s00002500.2 | PF02996.12 | Prefoldin | 40 | 156 | 4.40E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.522 |
| SRR1783600 | control | 8.326 |
| SRR1783602 | moderate drought stress | 11.566 |
| SRR1811619 | moderate drought stress | 11.728 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.300 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.550 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 23.251 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 21.753 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 32.574 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 32.587 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.873 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.067 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.904 |
| SRR2868004 | Drought Stress (root) | 16.074 |
| SRR2967015 | Control (root) | 15.825 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.302 |
| SRR9715740 | Leaf | 11.502 |
| SRR9715741 | Leaf | 11.055 |
| SRR9715739 | Root | 0.659 |
| SRR9715742 | Root | 3.542 |
| SRR9715743 | Root | 3.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 37.109 |
| SRR8749028 | MeJA induced 9h | 21.676 |
| SRR8749029 | MeJA induced 9h | 28.385 |
| SRR8749030 | Uninduced | 7.606 |
| SRR8749031 | Uninduced | 4.522 |
| SRR8749032 | Uninduced | 6.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.427 |
| SRR8400027 | Control - Root | 15.207 |