Gene detail

Gene detail information of Glyur000014s00002499.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G03750.1	0	switch 2
NR	XP_004505563.1	0	PREDICTED: putative DNA repair and recombination protein RAD26-like, partial [Cicer arietinum]
COG	YP_007365255.1	2.00E-62	SNF2 family domain-containing protein [Lawsonia intracellularis N343]
Swissprot	tr\|F4I2H2\|CHR9_ARATH	0	Switch 2 {ECO:0000312\|EMBL:AEE27606.1}
trEMBL	tr\|I1LS51\|I1LS51_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G13180.1}

Sequence

Transcript Sequence

>Glyur000014s00002499.1
GAAAATGTATTTGGCGGTTAACAATTGCAGTATCGTGCAAAATAGAAAAGAAGACAAAGGAGGCATCAAATTTGAAAATTTTGCGCAGCACTGAAGGAATTAAGTAAGTATGTCGCTGCAGGCTCTGAAGGAAAGCCTGAGACCTTGCACGACCCAACGACCACANCCACCTTCTTCATCTCCTTCCATTACCCAAACACACCCCAATTCCATTCTCCGCGACTGCGATTCCCACTTCCCCATCGACAGAAAACCCCCCAAATCCTCTCTTTCCCACCAGCTTCGCCGTCTCCACGATTCCCCGCTTCAGCCTCTGCCCCACAGTTTCCTTCAGCGACAAAAGGACCCCAAAACCCAACAACAGCAAGACGAAGAAGACGAAGATGATGAAGAAGAAGACGAGCCAGAGGCAAAGAGGGCNAAATTCGGCATAGCCAAATCGTCCCAGTTTCAGTTCGAGCATACTGGACCCTTTGAGCCTTTGCTCTTGTCTTCACATGGAGAAGTTCCTCTGGTTCAGGTTCCTGCATCTATAAACTGTAGACTGCTTGAGCATCAGAGAGTGGGAGTGCAGTTTCTGTATGGTCTGTACAAGAACAATCATGGAGGCATCCTTGGAGATGACATGGGTCTTGGAAAGACCATTCAAACAATAGCATTTCTTGCTGCCATCTTTGATAAAGAAGGAGAGTCTATTCTAAGCGACAAGAAGGTAGAGAAAAGAGACCCTGTATTAATAATTTGCCCAACATCCGTTATTCACAACTGGGAGAGTGAATTCTCTAAGTGGTCTAACTTTAGTGTTTCCATTTATCATGGTGCCAACCGGGATTTGATATATGATAAATTGGAAGCAAATGGAGTGGAGATACTTATTACCAGTTTTGACACTTACAGGATTCATGGCATTTCCTTGTCAGATATCAACTGGAATGTTGTGATTATTGATGAGGCTCATCGACTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCTGAGACGCTATGGTCTTACTGGGACCATGATGCAAAATAAGATCATGGAATTGTTCAATCTCTTTGACTGGGTTGCACCTGGATCCCTTGGGACACGGGAACACTTCCGTGAGTTCTATGANGAACCCCTTAAGCATGGTCAGAGGTCAACTGCTCCTGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAACACCTTGTGACGGTTCTTCATAAGTATATGTTGAGAAGGACAAAAGAAGAGACCATTGGGCATCTTATGATGGGGAAGGAAGATAACATTGTGTTTTGTGCAATGAGTGATTTGCAAAAACGTGCTTACAGGAGAATGTTACAGCTTCCTGACATTCAATGCCTTATAAATAAGGACCTGCCTTGTAGTTGTGGTAGCCCTCTCACTCAAGTTGAATGTTGCAAAAGGATGGTACCGGATGGAGTTATTTGGCCTTACCTTCACAGAGATAACCCCGATGGTTGTGATTCATGCCCCTTTTGCATTGTCCTTCCATGCCTTNTCAAGCTCCAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCTAAAGATGNCCCCGACAAACAAATGAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCCCAGATATTGACTTAGTGGGTGGGAACATGCAGAATGAAAGTTTCATGGGTCTAAGTGATGCGAAAAACTGTGGCAAAATGAGAGCACTTGAAAAACTATTGTTCTCCTGGATTTCACATGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTCTCATACGTAAAGGCTACTGCTTCTCAAGACTTGATGGGTCCACTCCGACTAATTTACGTCAGTCTCTGGTTGATGATTTCAACTCAAGTCCGAGCAAACTAGTGTTCCTGATATCAACTCGTGCCGGTGGGCTNGGATTGAACCTTGTCAGTGCAAACCGTGTTGTAATATTTGATCCTAATTGGAACCCTGCACAAGACTTACAGGCTCAAGATAGGTNATTTCGGTTTGGACAGAAGCGGCATGTTATGGTGTTCCGTCTTCTCGCAGCTGGTTCACTTGAAGAACTAGTTTATTCTCGTCAGGTGTACAAGCAGCAGCTCTCAAACATTGCTGTCTCTGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAGGAATTTCAAGGGGAGCTTTTTGGAATTTGCAATTTATTTCGAGATTTATCTGATAAGCTATTTACCAGTGAGATCGTTGAATTGCATGAGACGAGTAAAGAACATGGGCATAAAACAGAACAACAGGAAAAAATAAATCTGTCAGAAGAAACAGGTTTATTAGCATCAGAGTCTGAAACCGGGTTATGTACTGAATCTGCGAGGGCTTCAACAANTAAACCAGATCTTGAATTTGAAGACCTTGGCATTGTCTATGCTCATCGCAATGAAGACATTGTCAACCTCAGACCAGGAATTCAAGGGAAAATATATACCAGCAGCCCTTCAAGTGATGGCCTAAGCGAGCCAAACATCTCCTTAGCCCATCCAAACAAAATACCAGATTGTGTACCTAAGAAACAGAAGGTTCCTTCAATTGATGAAAGGAAGAGAACCCAATTTAGCCTCCTTGCNCAATCTATGGGCATGGGAGAGCTTGCATTTAGCAAATGGTTACTATCAGCAACGCCACTGGAGAGAGAGAAGGTGCTTGCAGACTACAAGAAGAAAAAGAAAATACCTAACGGTTGAAGAGTGGTTCTCATGGATGACAAAACAAATGAATGCCTTCCATGTAACGCTACTCACAATACCAAAACATAAGAAGATTGTGTAACATTTTGTACATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00014	133339	138388	+

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000014s00002499.1	PF00176.18	SNF2_N	149	414	8.70E-57
Glyur000014s00002499.1	PF00271.26	Helicase_C	568	647	1.60E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.787
SRR1783600	control	3.869
SRR1783602	moderate drought stress	6.609
SRR1811619	moderate drought stress	6.408

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.752
DRR006520	Root Summer glycyrrhizin high producing strain	2.642
DRR006521	Root Winter glycyrrhizin high producing strain	5.882
DRR006522	Root Winter glycyrrhizin high producing strain	5.763
DRR006523	Root Summer glycyrrhizin low producing strain	3.858
DRR006524	Root Summer glycyrrhizin low producing strain	3.881
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.006
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.028

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.223
SRR2868004	Drought Stress (root)	10.447
SRR2967015	Control (root)	10.417

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.075
SRR9715740	Leaf	4.810
SRR9715741	Leaf	4.840
SRR9715739	Root	0.688
SRR9715742	Root	3.492
SRR9715743	Root	3.377

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.245
SRR8749028	MeJA induced 9h	5.624
SRR8749029	MeJA induced 9h	3.348
SRR8749030	Uninduced	3.923
SRR8749031	Uninduced	5.614
SRR8749032	Uninduced	2.964

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.589
SRR8400027	Control - Root	7.294