Gene detail

Gene detail information of Glyur000014s00002484.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45300.1	1.00E-85	RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta
NR	XP_003605139.1	9.45E-148	3-phosphoshikimate 1-carboxyvinyltransferase [Medicago truncatula]
COG	YP_001357866.1	5.00E-50	3-phosphoshikimate 1-carboxyvinyltransferase [Sulfurovum sp. NBC37-1]
Swissprot	tr\|P05466\|AROA_ARATH	1.00E-111	3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic (Precursor)
trEMBL	tr\|G7JEN4\|G7JEN4_MEDTR	4.00E-148	3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256\|RuleBase:RU000531}

Sequence

Transcript Sequence

>Glyur000014s00002484.1
TCACAAAACTCTCCAATCATAGAGATAGAGAGAGAGCAAGAGATTGAAGGAAGGTTATAGAGAAAAAAGTTTGAAACTTTGAGGAAAATCAGAATGGCCCAAGTGAGCAGAATCCACAATCTAGCTCAAAGCACTCAAATTTTCCACCATTCTTCCAACTCCCACANACCCAAATCAGCAAACTCAGTTTCATTGAGGCCACACCTTTGGGGCTCCTCAAAATCATGGAGCATGAAGCATAAAAATGGAGTCTTTGTGGGAAATGGGGTTGTGGGTAGGGGCAATTCCGGCGTGTTGAAGGTTTCTGCCTCTGTTGCCGCCGCAGAGAAGCCGTCAACGGCGCCGGAGATCGTGTTGGAACCCATCAGAGATATTTCTGGTACCATCACATTGCCTGGGTCTAAGTCTCTATCCAATCGAATTCTGCTTCTTGCTGCTCTCTCTGAGGGAACAACTGTCGTAGAGAACTTGTTGGATAGCGAGGATGTTCATTACATGCTTGGTGCATTGAGGACCCTCGGATTGCGTGTGGAAGACAACAAAACAGCCAAACAAGCAGTTGTGGAAGGCTGTGGGGGATTATTTCCCACNGGTAGAGAATCTAAAGATGAAGTTACTTTATTCCTTGGGAATGCTGGTACTGCAATGCGTCCTTTGACGGCAGCCGTGACTGCTGCAGGTGGAAACACAAGCTANGTACTTGATGGGGTGCCCCGAATGAGAGAGAGGCCAATTGGGGATTTGGTGACTGGTCTTAAGCAGCTTGGTGCAGANGTTGATTGTTTTCTTGGCACAAACTGTCCACCCGTTCGTGTAGTTGGAAAAGGAGGGCTTCCAGGGGGAAAGGTNAGGCTTGCATTATATCGCATCTATCGAGATTATCCCTCACCTGTGCAACTATCTGGATCCGTGAGCAGTCAATACCTGACTGCTTTGCTTATGGCAGCTCCTTTGTCTCTCGGCGATGTGGAGATTGAGATTATTGATAAGCTGATTTCTGGGGCCAACTATGCAATACTGACATCCACTTTGCTTTTGCCTAATATGTCTTTGTTTGTTACCGGGATCATCCGTTTCTCCCTTGCTATCCAGCTCAATCTAAAAAAGCAATTTGCAACCAAAGTTAGCCAAGTTGGTCAACAAGATGATACCAAACTTCCTTCGCCTGATATATTTGGAAAATCATTTTGTACATTCTGTATTGGCCAAAATGATTTAACTTCCCACTTAGTAACCGTTGGCATAGGTGGAGGGCAGCAGTACCTCCCTCAAGTTGTCTCACAAATGGCTACCACCATTAAGGAGCTATATAAATCTAAGCTTGGTGGGCGAACATTTATGGTGCTTAATCTTGCACCAGTGGGATGCTACCCTTCATTCTGGGTGGAACTTCCTCATGATGGTTCCGACCTTGATGAATTTGGATGCATGGTTTCTTACAACAATGCGGTAGTGGACTACAAAACCATGTTGAAAGAGACACTGAAACAAACCAGAGAAAGCCTCTCGGATGCTTCTATCATTTATGTGGACACCCGTTCTGTTCTGTTGGAGCTCTTCCAGCACCCTACTTCTCATGGTCTTAAGTATGGTACAAAAACATGTTGTGGATCTGGAGGGGGTGACTACAACTTCGATCCTAAAGTTTACTATGGCAATACCAAGGATATAGATGGCAAAACAGTGACAGCAACAAACAAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00014	55663	63709	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00800	aroA	EC:2.5.1.19	Biosynthesis of amino acids	map01230
			Biosynthesis of amino acids	map01230
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups

GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000014s00002484.1	PF00275.15	EPSP_synthase	89	308	2.00E-50
Glyur000014s00002484.1	PF00657.17	Lipase_GDSL	307	493	3.30E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	38.334
SRR1783600	control	38.164
SRR1783602	moderate drought stress	37.217
SRR1811619	moderate drought stress	37.500

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	34.009
DRR006520	Root Summer glycyrrhizin high producing strain	32.678
DRR006521	Root Winter glycyrrhizin high producing strain	30.806
DRR006522	Root Winter glycyrrhizin high producing strain	30.032
DRR006523	Root Summer glycyrrhizin low producing strain	32.533
DRR006524	Root Summer glycyrrhizin low producing strain	33.307
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.196
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.167

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	83.246
SRR2868004	Drought Stress (root)	66.377
SRR2967015	Control (root)	72.765

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.278
SRR9715740	Leaf	21.459
SRR9715741	Leaf	25.265
SRR9715739	Root	21.763
SRR9715742	Root	42.559
SRR9715743	Root	38.616

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.532
SRR8749028	MeJA induced 9h	48.747
SRR8749029	MeJA induced 9h	19.886
SRR8749030	Uninduced	58.064
SRR8749031	Uninduced	38.826
SRR8749032	Uninduced	20.843

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	69.544
SRR8400027	Control - Root	57.232