Gene detail information of Glyur000014s00002481.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45300.1 | 4.00E-34 | RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta |
| NR | XP_003605139.1 | 2.82E-44 | 3-phosphoshikimate 1-carboxyvinyltransferase [Medicago truncatula] |
| COG | NP_231368.1 | 8.00E-27 | 3-phosphoshikimate 1-carboxyvinyltransferase [Vibrio cholerae O1 biovar El Tor str. N16961] |
| Swissprot | tr|P11043|AROA_PETHY | 5.00E-41 | 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic (Precursor) |
| trEMBL | tr|G7JEN4|G7JEN4_MEDTR | 1.00E-44 | 3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|RuleBase:RU000531} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00014 | 43319 | 43843 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00800 | aroA | EC:2.5.1.19 | Biosynthesis of amino acids | map01230 |
| Phenylalanine, tyrosine and tryptophan biosynthesis | map00400 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000014s00002481.1 | PF00275.15 | EPSP_synthase | 50 | 115 | 1.10E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.958 |
| SRR1783600 | control | 19.186 |
| SRR1783602 | moderate drought stress | 19.729 |
| SRR1811619 | moderate drought stress | 20.280 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 45.346 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 47.404 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 44.997 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 40.671 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 32.402 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 33.791 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.041 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.718 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 84.845 |
| SRR2868004 | Drought Stress (root) | 67.732 |
| SRR2967015 | Control (root) | 72.460 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 39.810 |
| SRR9715740 | Leaf | 29.952 |
| SRR9715741 | Leaf | 36.443 |
| SRR9715739 | Root | 16.756 |
| SRR9715742 | Root | 29.215 |
| SRR9715743 | Root | 29.311 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 87.220 |
| SRR8749028 | MeJA induced 9h | 50.240 |
| SRR8749029 | MeJA induced 9h | 62.612 |
| SRR8749030 | Uninduced | 208.692 |
| SRR8749031 | Uninduced | 120.098 |
| SRR8749032 | Uninduced | 98.465 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 59.359 |
| SRR8400027 | Control - Root | 48.870 |