Gene detail

Gene detail information of Glyur000014s00002480.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G00110.1	0	UDP-D-glucuronate 4-epimerase 3
NR	XP_003605138.1	0	UDP-glucuronate 4-epimerase [Medicago truncatula]
COG	YP_003710181.1	3.00E-113	NAD-dependent epimerase/dehydratase [Waddlia chondrophila WSU 86-1044]
Swissprot	tr\|O81312\|GAE3_ARATH	0	UDP-glucuronate 4-epimerase 3
trEMBL	tr\|G7JEN3\|G7JEN3_MEDTR	0	UDP-D-glucuronate 4-epimerase {ECO:0000313\|EMBL:AES87335.1}

Sequence

Transcript Sequence

>Glyur000014s00002480.1
ATGTCGCACGCCGCGGACAACAACAGTGCCCCATCGACACCAGGGAAGTTCAAGATGGAGAAGGCTTCGTACTTCAACCGTGTCCGGTGGCACGCTTCGCCGGCGAAGCTCGCACTCTGGTCCTTCGTCTTCTCGGCGGCGATCTTCATCTTCTTTTTCCGGTCACCGTCGTCCAACCCTCTCCCGTCGTCTGACCCCTCCCGCCGATCCCTCCGGAGTCCCTCCACCTACGGCGGCCCACTCTGGGAGAAGCGCGTACGCTCCTCCGCCCGCGTCCGCTCCCGCAACGGCTTCTCCGTCCTCGTCACNGGAGCAGCCGGTTTCGTCGGGACCCACGTCTCCGCGGCGCTTAANCGTCGCGGAGACGGTGTCCTCGGACTTGATAACTTCAACGACTACTACGACCCTTCGCTCAAGCGCGCGCGCCAGGCGCTGCTTGAGCGGACCGGGGTTTTCATCGTTGAAGGTGACATCAACGACGGTGCATTATTGAGGAAGCTGTTTGAGGTTGTTCCTTTCACACATGTCATGCATTTGGCTGCACAGGCTGGTGTGAGGTATGCTATGGAGAATCCTGGCTCTTATGTGCATAGTAACATTGCTGGTTTTGTTAATTTGCTTGAGGTTTGTAAGAGTGTTAACCCTCAACCTGCTATTGTGTGGGCTTCCTCTAGTTCTGTTTATGGTTTGAATACTAAGGTACCCTTTTCTGAGAGGGATAGGACTGACCAGCCTGCTAGCTTGTATGCTGCTACTAAGAAGGCNGGTGAAGAGATTGCCCATACTTATAACCATATCTATGGGCTCTCGCTTACCGGGTTGCGGTTCTTCACAGTTTATGGCCCTTGGGGTAGGCCTGACATGGCCTACTTCTTCTTTACTAGAGACATTTTGAAGGGGAAGGGGATCCCTATTTTCGAGGCCGCGAATCATGGTACCGTTGCTAGGGATTTTACTTACATTGATGACATTGTGAGGGGATGCTTGGGGGCGTTGGATACTGCAGAGAAGAGTACTGGGAGTGGAGGGAAGAAGAGGGGACCTGCGCAGTTGAGGGTTTTCAATTTGGGGAATACCTCGCCGGTTCCGGTTAGTGAGCTTGTTAGTATCTTGGAGAGGCTCTTGAAGGTGAAGGCGAAGAGGAACGTGATGAAGTTGCCGCGGAATGGGGACGTGCAGTTCACTCACGCGAATATTAGCTACGCACAGAGGGAGCTTGGGTATAAGCCTACGACGGACCTGCAGGCGGGGTTGAAGAAGTTTGTGAGGTGGTACCTGAATTACTACTCTGGTGGGAAGAAAGCTGTTGAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00014	27076	28389	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08679	E5.1.3.6	EC:5.1.3.6	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives

GO:0050662 coenzyme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000014s00002480.1	PF01370.16	Epimerase	100	336	8.20E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.189
SRR1783600	control	13.988
SRR1783602	moderate drought stress	11.184
SRR1811619	moderate drought stress	10.758

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.879
DRR006520	Root Summer glycyrrhizin high producing strain	23.255
DRR006521	Root Winter glycyrrhizin high producing strain	18.294
DRR006522	Root Winter glycyrrhizin high producing strain	16.639
DRR006523	Root Summer glycyrrhizin low producing strain	26.161
DRR006524	Root Summer glycyrrhizin low producing strain	20.437
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.803
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.627

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	49.327
SRR2868004	Drought Stress (root)	34.707
SRR2967015	Control (root)	35.515

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.749
SRR9715740	Leaf	21.583
SRR9715741	Leaf	14.674
SRR9715739	Root	7.127
SRR9715742	Root	14.842
SRR9715743	Root	13.750

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.298
SRR8749028	MeJA induced 9h	12.976
SRR8749029	MeJA induced 9h	21.942
SRR8749030	Uninduced	11.834
SRR8749031	Uninduced	5.792
SRR8749032	Uninduced	15.596

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.735
SRR8400027	Control - Root	25.669