Gene detail information of Glyur000014s00002479 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22660.1 | 5.00E-67 | rRNA processing protein-related |
| NR | XP_004512466.1 | 4.90E-174 | PREDICTED: probable rRNA-processing protein EBP2 homolog [Cicer arietinum] |
| Swissprot | tr|Q9LUJ5|EBP2_ARATH | 8.00E-120 | Probable rRNA-processing protein EBP2 homolog |
| trEMBL | tr|G7KAW7|G7KAW7_MEDTR | 1.00E-161 | rRNA-processing EBP2-like protein {ECO:0000313|EMBL:AES95695.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00014 | 15161 | 16030 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000014s00002479.1 | PF05890.7 | Ebp2 | 14 | 285 | 4.70E-75 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 38.976 |
| SRR1783600 | control | 39.313 |
| SRR1783602 | moderate drought stress | 32.875 |
| SRR1811619 | moderate drought stress | 33.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 52.492 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 52.376 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 60.754 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 57.732 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 69.704 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 69.898 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.938 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.210 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 62.525 |
| SRR2868004 | Drought Stress (root) | 45.774 |
| SRR2967015 | Control (root) | 35.175 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 22.433 |
| SRR9715740 | Leaf | 35.324 |
| SRR9715741 | Leaf | 22.191 |
| SRR9715739 | Root | 3.210 |
| SRR9715742 | Root | 33.169 |
| SRR9715743 | Root | 32.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 198.928 |
| SRR8749028 | MeJA induced 9h | 99.778 |
| SRR8749029 | MeJA induced 9h | 154.189 |
| SRR8749030 | Uninduced | 35.026 |
| SRR8749031 | Uninduced | 28.390 |
| SRR8749032 | Uninduced | 35.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 57.343 |
| SRR8400027 | Control - Root | 47.380 |