Gene detail

Gene detail information of Glyur000013s00003275

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G48570.1	1.00E-138	FKBP-type peptidyl-prolyl cis-trans isomerase family protein
NR	XP_003520475.2	0	PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP65-like isoform X1 [Glycine max]
COG	YP_007057296.1	3.00E-27	FKBP-type peptidyl-prolyl cis-trans isomerase [Rivularia sp. PCC 7116]
Swissprot	tr\|Q9FJL3\|FKB65_ARATH	0	Peptidyl-prolyl cis-trans isomerase FKBP65
trEMBL	tr\|K7KEL5\|K7KEL5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G27750.2}

Sequence

Transcript Sequence

>Glyur000013s00003275.1
ATGGCATTCTCCCAGCAAAACCAATCTCTGGAAAATGAAGTGAAAACTGAAGACTCAGAATTCCCTATCAAGGAAATTGGAAATGAAGGTCTCACAAAACGGATTCTCAGAAAAGGTGTCACTTGGCAAACTCCATTCTCTGGAGACGAAGTGGAAGTTCATTTCAGAGGACAAGTTGAAAACGGAGAATCTCTTGAATCCAGTTATGGTAAAGGGTCCTCGTTTCGCTTCAAATTAGGCCAAGGTGAAGTAATCAAAGGTTGGGATGAAGGAGTTGCAACCATGAAGAAAGGGGAGAGAGCAATCTTCAAAATACCACCCAACTTGGCATATGGGGCAGTAGGTTCTCCACCTTTGATTCCTCCCAATGCAACTCTCATTTTTGACATTGAGATGTTGTCTTGGAGTACCATCAGGGACTTGACTGGCGATGGAGGAATCATGAAAAAGATAATACTGGAGGGACAAGGATGGGCTACTCCCAGAGAGGCTGATGAGGTGCTAGTTAAATATGAAGCAAGGCTAGAGAATGGAATGCTTGTCAAGTCTGAGAAAGGTGTGGAGTTTAATGTAAGTGATGGTTATCTTTGTCCTGCAATGAGCATAGCAGTAAAGACAATGAGAAAGGGCGAGGTGGCAGAGCTAGCTATGAAATTCTTTTATGGGCTCAGNAGTCAAAATTCAAATGGAACCACTGAGCTTGATGGTTTACCAGATTCTAATTTAACCACCATCAAACTTGAGCTGGTATCATGGAAAATTGTTACTGCTGTCACGGGAGATAAGAAGATACTGAAAAAAATTAAGAAAGCTGGTGAGGGGTTTGATCGTCCTAACGAAGGATCCCAAGTGAAAGGTGGTACAATTATTGAGAGGAAAGGGTCAGAGGAAGAACCTTTTGAGTTCACAACTCAGGAAGAACAGGTNCCTGAGGGTCTAGAAAGAGCAATAATGACAATGAAGAAAGCAGAACAAGCTCTGGTGACTATCAATGCTGAATATTTGTGTGCCCATAACAATTCACAGGGAAACACAGCCAATAATAAAGTCCTTTATTATGAAGTTGAACTGGTTGATTTCATTAAGCCATTTTGGAAAATGGACACTCAAGAGAAACTAGAAGCTTGTGAGCGGAAGAAGCATGATGGAAACCTTCTGTTCAAGGCTGAAAATTTCAGGCGCGCATCCATGAAATATGAAAAGGCTGTGAAATACATTGAGTTTGATCACTCATTCAGTGATGATGAGAAGCGTCATGCTGATACCTTGCGATTATCCTGTAATTTGAATAAAGCTGCTTGTGAACTTAAGTTGGGGGAGTACACTGAAGCTGCCAGACTATGCACAAAGGTCCNAGAACAAGACCCCTTAAATGTCAAGGCTCTTTACAGAAGATGCCAAGCATACCTAAAAACATCAGAATTGGAGAAAGCTGAAGATGACATTAAAAGAGCCTTGATCATTGACCCAAATAACAGAGACATTAAGCTTGAGCACAAAGAGTTGAAACTTAAGCAAAAGGAATACAATAGATATGAAGCTGACATCTTCAGCACAATGCTTTCAAGGATGAGTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00013	646154	649831	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006457 protein folding

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000013s00003275.1	PF00254.23	FKBP_C	46	133	9.90E-30
Glyur000013s00003275.1	PF00254.23	FKBP_C	160	232	2.00E-07
Glyur000013s00003275.1	PF00254.23	FKBP_C	285	358	3.20E-09
Glyur000013s00003275.1	PF13414.1	TPR_11	430	490	5.60E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.088
SRR1783600	control	0.136
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.068
DRR006520	Root Summer glycyrrhizin high producing strain	0.066
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.067
DRR006523	Root Summer glycyrrhizin low producing strain	0.069
DRR006524	Root Summer glycyrrhizin low producing strain	0.069
DRR006525	Leaf Summer glycyrrhizin high producing strain	38.615
DRR006526	Leaf Summer glycyrrhizin high producing strain	38.114

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.302
SRR2868004	Drought Stress (root)	0.284
SRR2967015	Control (root)	0.041

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.955
SRR9715740	Leaf	32.492
SRR9715741	Leaf	8.632
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.039

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.265
SRR8749028	MeJA induced 9h	2.204
SRR8749029	MeJA induced 9h	1.142
SRR8749030	Uninduced	0.207
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.124
SRR8400027	Control - Root	0.069