Gene detail

Gene detail information of Glyur000013s00003269

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G56630.1	9.00E-179	cytochrome P450, family 94, subfamily D, polypeptide 2
NR	XP_003624855.1	0	Cytochrome P450 [Medicago truncatula]
COG	YP_004654290.1	6.00E-36	monooxygenase [Runella slithyformis DSM 19594]
Swissprot	tr\|Q9SMP5\|C94B3_ARATH	4.00E-149	Cytochrome P450 94B3
trEMBL	tr\|G7L4Q9\|G7L4Q9_MEDTR	0	Cytochrome P450 family protein {ECO:0000313\|EMBL:AES81073.1}

Sequence

Transcript Sequence

>Glyur000013s00003269.1
ATGGAGCTCTTCTTCTCAGCTGAGCCGTTGTTCTTCTTCCTATCCCTTCTCTTCCTCTATCTCTGCGTCCAATTCCTCCCCACAAAAAAACCCATCAACAACAAAAACAGAGGTTTCAAAATCTACCCTCTGGTCGGAGCGCTACCGGAATTCTTGTGGAACCGCCACCGCTTCCTGGAATGGACCACCCAAGTCCTCCGCGACTGCCCCGCCAACACCGCCGTCTTCTACCGACNCGGCAAGGTCCACGGCATCATAACGGCCAACCCGGAAAACGTGGAACACATGCTGAAGACAAAGTTCGAAAACTACCCAAAGGGAGAGCGATTCATCAGCCTCCTCCAAGACTTCTTAGGAAGGGGAATCTTCAACTCCGACGGCGAACTCTGGAAGGTTCAGAGGAAAACCGCCAGCTACGAGTTCAACACGAAATCGCTGAGAAACTTCGTGATTGAAAACGTCACGGTGGAAACGCAGACGAGGCTGGTTCCGATCCTGTTCCGAGCCTCAGGTACGGACACGGTCCTCGATTTACAGGACGTTTTGGAGAGGTTCGCGTTTGACAACGTGTGCAAGCTCGCGTTCAACTTCGACCCCGGTTGCCTCGGCGGCGACGGCACCGCCGGTGCGGAGTTCATGCGCGCGTTCGAGGACGCCGCGGCACTTAGCTCCGGGAGGTTCATGTGTGCCCTGCCGGTGATGTGGAAGATCAAGAGGGCTCTCAACGTGGGAACAGAGCGAAGGCTGAGGGAATCAATCTCCACCGTACACGANTTCGCCGACGAGATCATACGGTCCAGATTGGAAGCCAGGGTGGGACCCACGAGAGACCAGGACTTGCTCTCTCGGTTCATCGGAACAGAGGAGTCGCCGGAGTTTCTACGCGATATCGTCATAAGCTTCATTCTCGCGGGACGCGATACGACGTCGTCTGCTCTGAGTTGGTTCTTCTGGATCCTATCTTCAAGACCGGACGTGAAGGAAAAAATACTCAGCGAAATCGAAACGGTTCGTTCTGGGAGAAGTGGAAGCGAAACGACGTCGTTTGCGTTTGGGTACGANGAGCTGAAGGAGATGCATTACTTGCACGCGGCGATTTCGGAGGCGATGAGGTTGTACCCGCCTGTGCCGGTTGACACGAAGGCGTGCTTAAACGACGACGTTTTGCCGGACGGTACTAGAGTTGGGAAGGGGTGGTTTGTGTCTTACCACACGTACGCGATGGGGAGGATGGAGAGCGTGTGGGGGAAGGACTGTTTGGAGTTTAAGCCGGAGAGGTGGATTGAGGAGAACGGGGTTTGGCGGAGCGAGAGTCCGTTTCGGTATCCGGTGTTTCACGCGGGTCCCAGGATGTGTTTGGGGAAGGAAATGGCTTATATTCAGATGAAGTCGATTGCGGCTTCGGTGTTGGAGAGGTTTGAGATTGAGGCGGTGGATAAGGACACGTGTCCTGAGCATCTTTTGTCATTGACTCTGAGGCTGAAGAATGGGTTGCCCGTGAGGGTAAGAGTAGTAAGGGAGAGAGATCATGTGAAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00013	612471	614009	-

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP94D2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000013s00003269.1	PF00067.17	p450	77	484	2.90E-66

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.050
SRR1783600	control	11.276
SRR1783602	moderate drought stress	20.134
SRR1811619	moderate drought stress	20.094

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.213
DRR006520	Root Summer glycyrrhizin high producing strain	20.762
DRR006521	Root Winter glycyrrhizin high producing strain	15.305
DRR006522	Root Winter glycyrrhizin high producing strain	15.435
DRR006523	Root Summer glycyrrhizin low producing strain	21.707
DRR006524	Root Summer glycyrrhizin low producing strain	21.736
DRR006525	Leaf Summer glycyrrhizin high producing strain	150.094
DRR006526	Leaf Summer glycyrrhizin high producing strain	149.769

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.233
SRR2868004	Drought Stress (root)	15.893
SRR2967015	Control (root)	14.576

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	106.780
SRR9715740	Leaf	172.633
SRR9715741	Leaf	106.229
SRR9715739	Root	49.282
SRR9715742	Root	36.684
SRR9715743	Root	42.301

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.082
SRR8749028	MeJA induced 9h	1.794
SRR8749029	MeJA induced 9h	0.678
SRR8749030	Uninduced	1.099
SRR8749031	Uninduced	0.098
SRR8749032	Uninduced	0.786

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.302
SRR8400027	Control - Root	32.951