Gene detail

Gene detail information of Glyur000013s00003265

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68570.1	1.00E-140	Major facilitator superfamily protein
NR	XP_004493331.1	0	PREDICTED: uncharacterized protein LOC101504345 [Cicer arietinum]
COG	YP_002494545.1	1.00E-32	amino acid/peptide transporter [Anaeromyxobacter dehalogenans 2CP-1]
Swissprot	tr\|Q9SX20\|PTR18_ARATH	0	Protein NRT1/ PTR FAMILY 3.1
trEMBL	tr\|G7L4V2\|G7L4V2_MEDTR	0	Nitrate transporter 1 {ECO:0000313\|EMBL:AES81116.2}

Sequence

Transcript Sequence

>Glyur000013s00003265.1
ATGGAGACAGGGAAGAGCACGGGCAGTGGCAGTGACGAGGTGGTCGTGAAAGAAGAGCAACACGCTAAGAAGAGGAAACCGCAGCGACGAGGAGGCATCCGAACACTGCCTTTCATCCTTGCAAATGAGTTATGTGATAGATTTGCGGTGGCTGGTTTTAATGGTAACTTGATAAGTTACCTGACCCAAGAGCTGAACATGCCATTGGTAGCAGCATCAAACACACTCACAATCTTTGGTGGAACCGCTAGCTTCACACCTCTCCTTGGTGCTCTCATTGCTGAGTCCTTTGCTGGCCAGTTTTGGACCATTACTATTGCTTCCCTCATCTATGAACTGCTATCAATACTATACATCTCTCTCATCCTCATATCTCTTGGGTCAGGTGGCATTAGACCGTGTGTTATTCCCTTTTTGGGAGGTCAATTTGACATGACCAAAAAAGGTGTGGCATCTAGGAACTGGAACATCTTCAATTGGTACTTTTTCTGCCTAGGATTTGCTTCTCTAAGTGCATTGACCATTGTGGTATACATTCAAGACAATACGGGTTGGGGCTGGGGCTTTGGCATACCAACCATTGTCATGCTAATATCCATCATTGCCTTTGTGTTGGGCTCACCATTTTATAAGACTGTGAAACCAAATGGGAGCCCTTTGGTTCGTTTGGCCCAGGTGATTATAGCAGCTGTGAAAAAAAGGAAACAAGCTTTACCAGATGATCCCAAGCTTTTGTACCAGAATAGGGAGCTTGATGCTTCAATTTCTTTGGAAGGAATGCTTTTACACACAAATCAATATAAATGCTTGGATAAGGCTGCAATTGTTACATGGGAGGAGGGTAGGGAACCAAATGCACCACCNAATTTATGGAAATTGGCCACTGTCCATAGAGTTGAGGAGCTGAAATCTATCATCAAAATCCTTCCAATTTCTGCATCAGGGATTTTGCTCATAGCTGCTTCATCACATCTACCTAGCTTTGTCATTCAACAAGCTCGTACAATGGATCGTCACCTTTCTCATTCATTTCAAATTTCCCCTGCCAACATGTCTGTTTTCAGTGTGCTAACCATGATGGTAGGAGTTATTATATATGAACGCCTTTTTGTTCCTTTAGCTCGTAGATTCACAGGGAACCCTTCTGGAATCACATGCTTACAAAGAATGGGAATAGGCTTTGTAATTAACATTCTAGCCACAGTGATTTCAGCACCAGTGGAAATCAAAAGGAAAGAAATTGCTGCCAAGTACCACTTGTTGGATGATCCAAAAGCCATTATTCCTATCAGTGTGTTCTGGTTGGTACCTCAATATTGTTTACATGGACTCGCTGATGTTTTCATGTCTATTGGGCTTTTTGAGTTTCTCTTTGATCAATCACCTGAAAGCATGAGAAGCAGTGCTACAGCTATCTACTGCATAGTTATAGCCATTGGGAGCTATACGGGTACACTAGTAGTGACACTTGTCCATAAGTATACTGGAAAAGAAAGGAACTGGTTGCCTGATAGGAACCTCAATAGGGGTAGATTGGAGTATTATTATTTTCTTGTTAGTGGGATTCAAGTTTTAAATCTCATTTATTATGGAATATGTGTTTGGTTTTACACTTACAAGCCCTTGGAAGAAAATAATGAGATGAACAAGAAGGAAGAAAATTTGGAATTACAAGACAATACAAATATCTCATCCGCCGTCTTAGAAAATGGAGAAATGGAGATAGAGAAGAGGACTAATACTAATAGGGGCAGTATGGAGGAAATGGTAGAGAAAGAAGAGGAAGAGCTACAACACAGCATGAAGATCAGGAAGCGGCAATATCGACGAGGAGGCATCCGAACTTTACCTTTCATCCTTGCAAATGAATTATGTGACAGATTTGCGAGCGCTGGTTTTCACAGTAACTTGATAAGTTACCTGACCCAAGAGCTGAACATGCCATTGGTATCAGCCTCAAACACACTCACAAACTTTGGGGGAACATCAAGCTTCACCCCTCTCATTGGGGCTGTAATTGCAGATTCCTTTGCTGGCCGGTTCTGGACCATTACTGTTGCTTCTCTTATCTATGAACTGGGATTGGTTAGTATCACTCTATCAGTTATTCTGCCACATACGCGCCCTCCACCATGCCCAACACAAGTGAATTGTCAAGAAGCCACATCCTCACAACTATGGATACTCTACATGTCTCTCCTCCTCACATCTATTGGTTCAGGTGGCATTAGACCCTGTGTTGTGCCTTTTTCAGCTGACCAATTCGACATGACAAAAAATGGTGTGGCATCTAGGAAGTGGAACCTCTTCAATTGGTACTTTTTCAGCATGGGGTTGGCTTCNCTAAGTGCTTTGACCATTGTGGTCTATGTCCAAGACAACATTGGTTGGGGTTGGGGTCTTGGCATTCCAACCATTGCCATGTTGATATCAATAATTGCNTTTGTGTTGGGCTNACCACTCTATAAGACTGTGAAACCAGAAGGGAGCCCTNTGGTTCGTTTGGCCCAAGTGATTGTGGCAGCTATAAAGAAGAGGAATAAGACATTACCAGATGACCCCAAGCTTTTATACCAAAACAGGGAACTTGATGCTTCTATTTCTTTAGAAGGAAGTCTTTTACACTCGGATCAATACAAATGGTTGGACAAGGCTGCAATTGTGACAGAGGAAGAAGCCAAAGATCCAAATGCACCACCAAACCTATGGAAATTAGCCACTGTCCACAGGGTTGAGGAGCTAAAATCTATCATTAGAATGCTCCCAATTTGGGCTTCAGGANTCTTGCTCATAACTTCTTCATCACATTTACATAGCTTTGTCATTCAACAAGCTCGCACAATGGATCGTCACCTCTCTCCCTCATTCCAAATTGCTCCAGCCAACATGTCTATTTTCAGTGTGCTAACCATGATGACAGGAGTTATCCTATATGAACGNCTTTTTGTCCCCTTTGCACGTAGATTCACAAAGAACCCTTCTGGAATCACGTGTTTGCAAAGGATGGGAGTAGGTTTTGTGGTTAACATTGTAGCCACTATAGTGTCAGCACTAGTTATAAATCTCATTTATTATGTAATATGTGCTTGGTTTTACACTTACAAGCCCTTGGAAGAAATTTGTGGAAGGGGCAAGGATGAAGATTTGGAACAAGCTAATGATAATATCCCGCATGTCAGTTTAAAAGATGGTAGAGAGGAAGAAAAGAAAGAGTTTACAAAGGAATGA

Protein Sequence

>Glyur000013s00003265.1
METGKSTGSGSDEVVVKEEQHAKKRKPQRRGGIRTLPFILANELCDRFAVAGFNGNLISYLTQELNMPLVAASNTLTIFGGTASFTPLLGALIAESFAGQFWTITIASLIYELLSILYISLILISLGSGGIRPCVIPFLGGQFDMTKKGVASRNWNIFNWYFFCLGFASLSALTIVVYIQDNTGWGWGFGIPTIVMLISIIAFVLGSPFYKTVKPNGSPLVRLAQVIIAAVKKRKQALPDDPKLLYQNRELDASISLEGMLLHTNQYKCLDKAAIVTWEEGREPNAPPNLWKLATVHRVEELKSIIKILPISASGILLIAASSHLPSFVIQQARTMDRHLSHSFQISPANMSVFSVLTMMVGVIIYERLFVPLARRFTGNPSGITCLQRMGIGFVINILATVISAPVEIKRKEIAAKYHLLDDPKAIIPISVFWLVPQYCLHGLADVFMSIGLFEFLFDQSPESMRSSATAIYCIVIAIGSYTGTLVVTLVHKYTGKERNWLPDRNLNRGRLEYYYFLVSGIQVLNLIYYGICVWFYTYKPLEENNEMNKKEENLELQDNTNISSAVLENGEMEIEKRTNTNRGSMEEMVEKEEEELQHSMKIRKRQYRRGGIRTLPFILANELCDRFASAGFHSNLISYLTQELNMPLVSASNTLTNFGGTSSFTPLIGAVIADSFAGRFWTITVASLIYELGLVSITLSVILPHTRPPPCPTQVNCQEATSSQLWILYMSLLLTSIGSGGIRPCVVPFSADQFDMTKNGVASRKWNLFNWYFFSMGLASLSALTIVVYVQDNIGWGWGLGIPTIAMLISIIAFVLGXPLYKTVKPEGSPXVRLAQVIVAAIKKRNKTLPDDPKLLYQNRELDASISLEGSLLHSDQYKWLDKAAIVTEEEAKDPNAPPNLWKLATVHRVEELKSIIRMLPIWASGXLLITSSSHLHSFVIQQARTMDRHLSPSFQIAPANMSIFSVLTMMTGVILYERLFVPFARRFTKNPSGITCLQRMGVGFVVNIVATIVSALVINLIYYVICAWFYTYKPLEEICGRGKDEDLEQANDNIPHVSLKDGREEEKKEFTKE

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00013	583206	596878	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000013s00003265.1	PF00854.16	PTR2	114	472	3.50E-81
Glyur000013s00003265.1	PF00854.16	PTR2	681	1019	1.00E-75

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.393
SRR1783600	control	0.387
SRR1783602	moderate drought stress	0.374
SRR1811619	moderate drought stress	0.398

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.069
DRR006522	Root Winter glycyrrhizin high producing strain	0.067
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.018
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.158

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.799
SRR2868004	Drought Stress (root)	9.151
SRR2967015	Control (root)	7.851

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.058
SRR9715740	Leaf	0.002
SRR9715741	Leaf	0.457
SRR9715739	Root	0.062
SRR9715742	Root	0.019
SRR9715743	Root	0.104

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.862
SRR8749028	MeJA induced 9h	0.489
SRR8749029	MeJA induced 9h	1.406
SRR8749030	Uninduced	0.212
SRR8749031	Uninduced	0.471
SRR8749032	Uninduced	1.174

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.923
SRR8400027	Control - Root	2.218