Gene detail

Gene detail information of Glyur000013s00003263

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G56650.1	2.00E-99	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein
NR	XP_004493332.1	2.55E-159	PREDICTED: psbP domain-containing protein 6, chloroplastic-like [Cicer arietinum]
Swissprot	tr\|Q9LXX5\|PPD6_ARATH	5.00E-126	PsbP domain-containing protein 6, chloroplastic (Precursor)
trEMBL	tr\|A2Q6H0\|A2Q6H0_MEDTR	4.00E-153	Thylakoid lumenal 29.8 kDa protein {ECO:0000313\|EMBL:AES81122.1}

Sequence

Transcript Sequence

>Glyur000013s00003263.1
GTGTGATCCACATATCATATCATGTATTTTTGACAATGGATAAGAGAGGCAGAGTGACCCAAACAACGTTGTTGAAACCTTGTTCCCTTCATACATTCCACTAAGCAGAAAATGGCAATGGCAGCCTCTCCATTCACCTCTTTGCTCCCAGTCTCAACTCCATCTTCATCCCACCCATCTTCAAAGCTCCCTCCTTTTCGTGCATTAAGAGCCTCAGCTTCTGACTCAGTAGTAGTTCCTGCAAGTCACTGCAGAAGGGAATTCCTAAAGGGTATTGCCTTGCAGGCTCTTTCACTCCCACTTCTTGTTCTGACACAGCCACACCACTCACAAGCTAGAGAAATTGAGGTTGGATCCTTCCTCCCACCTTCACAATCTGACCCATCTTTTGTTCTCTTCAAAGCTTCTCCCAAAGACACTCCTGCCCTTCGAGCAGGAAATGTGCAGCCATACCAGTTTATCCTTCCCCCAACTTGGAAACAGGCGCGCGTGGCTAACATACTGTCAGGAAATTACTGTCAACCAAAATGTGCAGAGCCCTGGGTGGAGGTTAAATTTGAGGATGAAAAACAAGGGAAAGTCCAGGTAGTGGCTTCGCCTTTGATCCGCCTAACCAACAAACCGAATGCTACAATTGAGGACATTGGGAGCCCGGAAAAAGTGATTGCTTCTCTCGGGCCATTTGTCACCGGAAACACTTATGATCCAGATGAGCTCCTTGAGACTTCTGTTGAAAAGCTTGATGATCAGACGTACTACAAATATGTGCTTGAAACTCCATATGCTCTTACGGGTTCGCACAATCTAGCAAAAGCAACAGCAAAGGGAAACACTGTTGTTTTGTTTGTGGCTAGTGCCAGTGACAAGCAGTGGCAAACATCTGAGAAGACTCTAAAGACCATGCTTGATTCCTTTAAAGTGTAGTTTTCTGTCAAAGGGTATTACTCTCTCAAGTGACATTTTTGTATTCCATTTCAAATATTGAAAACAGAAAGGTGGTGTGTTTGCCAAAAGTTAGTGAAATTAATAGAGCAAGGTTGAATATTTGCTCCATTTTTGTAGCCCTACATAAGTTTATATTGTCACCGTTGACTTCAAAATAAGGAATAGCCTATTGGAACATTAAGGTTGAAATGCAAGGAAATACATTGTAGTTTTTGGAAATGCTGCCTCTCTTGTATCAACTGTGGTATACGCTTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00013	577426	581102	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015979 photosynthesis

cellular_component

GO:0009523 photosystem II

GO:0009654 photosystem II oxygen evolving complex

GO:0019898 extrinsic component of membrane

molecular_function
GO:0005509 calcium ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000013s00003263.1	PF01789.11	PsbP	114	270	7.80E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.154
SRR1783600	control	1.963
SRR1783602	moderate drought stress	2.575
SRR1811619	moderate drought stress	2.518

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.983
DRR006520	Root Summer glycyrrhizin high producing strain	0.974
DRR006521	Root Winter glycyrrhizin high producing strain	0.092
DRR006522	Root Winter glycyrrhizin high producing strain	0.090
DRR006523	Root Summer glycyrrhizin low producing strain	0.733
DRR006524	Root Summer glycyrrhizin low producing strain	0.551
DRR006525	Leaf Summer glycyrrhizin high producing strain	37.523
DRR006526	Leaf Summer glycyrrhizin high producing strain	36.527

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.031
SRR2868004	Drought Stress (root)	4.656
SRR2967015	Control (root)	4.430

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.713
SRR9715740	Leaf	57.751
SRR9715741	Leaf	26.512
SRR9715739	Root	2.315
SRR9715742	Root	1.650
SRR9715743	Root	1.639

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.275
SRR8749028	MeJA induced 9h	0.545
SRR8749029	MeJA induced 9h	1.806
SRR8749030	Uninduced	0.128
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.547

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.142
SRR8400027	Control - Root	2.978