Gene detail information of Glyur000013s00003259 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G56680.1 | 2.00E-85 | Single-stranded nucleic acid binding R3H protein |
| NR | XP_006576254.1 | 0 | PREDICTED: uncharacterized protein LOC100814835 isoform X1 [Glycine max] |
| trEMBL | tr|I1JN16|I1JN16_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G27880.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00013 | 558699 | 562459 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000013s00003259.1 | PF01424.17 | R3H | 34 | 100 | 1.40E-10 |
| Glyur000013s00003259.1 | PF12752.2 | SUZ | 127 | 175 | 1.20E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 70.647 |
| SRR1783600 | control | 70.996 |
| SRR1783602 | moderate drought stress | 132.651 |
| SRR1811619 | moderate drought stress | 132.636 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 100.537 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 98.948 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 255.715 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 250.781 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 135.597 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 134.465 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 48.160 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 47.903 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 88.819 |
| SRR2868004 | Drought Stress (root) | 134.478 |
| SRR2967015 | Control (root) | 163.613 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 123.570 |
| SRR9715740 | Leaf | 166.113 |
| SRR9715741 | Leaf | 167.337 |
| SRR9715739 | Root | 94.040 |
| SRR9715742 | Root | 127.796 |
| SRR9715743 | Root | 125.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 183.157 |
| SRR8749028 | MeJA induced 9h | 189.294 |
| SRR8749029 | MeJA induced 9h | 174.239 |
| SRR8749030 | Uninduced | 208.565 |
| SRR8749031 | Uninduced | 207.917 |
| SRR8749032 | Uninduced | 259.901 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 131.513 |
| SRR8400027 | Control - Root | 113.434 |