Gene detail information of Glyur000013s00003255 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06150.1 | 2.00E-117 | Cyclin family protein |
| NR | CAA99990.1 | 0 | mitotic cyclin [Sesbania rostrata] |
| Swissprot | tr|P25011|CCNB1_SOYBN | 0 | G2/mitotic-specific cyclin S13-6 |
| trEMBL | tr|P93557|P93557_SESRO | 0 | Mitotic cyclin {ECO:0000313|EMBL:CAA99990.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00013 | 535903 | 538872 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000013s00003255.1 | PF00134.18 | Cyclin_N | 213 | 338 | 3.30E-45 |
| Glyur000013s00003255.1 | PF02984.14 | Cyclin_C | 340 | 456 | 6.50E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.908 |
| SRR1783600 | control | 9.853 |
| SRR1783602 | moderate drought stress | 7.565 |
| SRR1811619 | moderate drought stress | 7.592 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 57.072 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 56.166 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.056 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.055 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.512 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.693 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.767 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.780 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.538 |
| SRR2868004 | Drought Stress (root) | 16.114 |
| SRR2967015 | Control (root) | 19.446 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.545 |
| SRR9715740 | Leaf | 0.128 |
| SRR9715741 | Leaf | 1.242 |
| SRR9715739 | Root | 2.887 |
| SRR9715742 | Root | 3.245 |
| SRR9715743 | Root | 2.433 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 42.019 |
| SRR8749028 | MeJA induced 9h | 23.178 |
| SRR8749029 | MeJA induced 9h | 17.931 |
| SRR8749030 | Uninduced | 0.162 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.782 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.736 |
| SRR8400027 | Control - Root | 16.447 |